Construct: ORF ccsbBroad304_04176

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006973.1_s304c1, BRDN0000403126
Derived from:
ccsbBroadEn_04176
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UXS1 (80146)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04176
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80146 UXS1 UDP-glucuronate decarboxyla... NM_025076.4 100% 100%
2 human 80146 UXS1 UDP-glucuronate decarboxyla... NM_001253875.1 98.8% 98.8% 121_135del
3 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_011511903.2 94% 91.8% (many diffs)
4 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_011511902.2 92.9% 90.8% (many diffs)
5 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005009.1 87.1% 87.1% 967_968ins162
6 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005008.1 86.1% 86.1% 121_135del;982_983ins162
7 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_011511904.3 86% 82.7% (many diffs)
8 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005010.1 85% 80.6% 1025_1026ins104;1071_1072ins85
9 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_006712775.4 84% 79.6% 121_135del;1040_1041ins104;1086_1087ins85
10 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005011.2 81.4% 75.5% (many diffs)
11 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005012.2 81.4% 75.5% (many diffs)
12 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005013.2 74.2% 74.2% 0_1ins324
13 human 80146 UXS1 UDP-glucuronate decarboxyla... NM_001253876.1 60% 60% 0_1ins504
14 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_017005014.2 60% 60% 0_1ins504
15 human 80146 UXS1 UDP-glucuronate decarboxyla... XM_024453157.1 60% 60% 0_1ins504
16 human 80146 UXS1 UDP-glucuronate decarboxyla... NR_045607.1 57.6% 1_98del;217_218ins49;1310_2053del
17 mouse 67883 Uxs1 UDP-glucuronate decarboxyla... NM_026430.3 89.1% 98.5% (many diffs)
18 mouse 67883 Uxs1 UDP-glucuronate decarboxyla... XM_006496227.3 88% 97.4% (many diffs)
19 mouse 67883 Uxs1 UDP-glucuronate decarboxyla... XM_006496228.3 52.9% 59.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1326
ORF length:
1260
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt gagcaaggcg ctgctgcgcc tcgtgtctgc cgtcaaccgc aggaggatga
121agctgctgct gggcatcgcc ttgctggcct acgtcgcctc tgtttggggc aacttcgtta
181atatgaggtc tatccaggaa aatggtgaac taaaaattga aagcaagatt gaagagatgg
241ttgaaccact aagagagaaa atcagagatt tagaaaaaag ctttacccag aaatacccac
301cagtaaagtt tttatcagaa aaggatcgga aaagaatttt gataacagga ggcgcagggt
361tcgtgggctc ccatctaact gacaaactca tgatggacgg ccacgaggtg accgtggtgg
421acaatttctt cacgggcagg aagagaaacg tggagcactg gatcggacat gagaacttcg
481agttgattaa ccacgacgtg gtggagcccc tctacatcga ggttgaccag atataccatc
541tggcatctcc agcctcccct ccaaactaca tgtataatcc tatcaagaca ttaaagacca
601atacgattgg gacattaaac atgttggggc tggcaaaacg agtcggtgcc cgtctgctcc
661tggcctccac atcggaggtg tatggagatc ctgaagtcca ccctcaaagt gaggattact
721ggggccacgt gaatccaata ggacctcggg cctgctacga tgaaggcaaa cgtgttgcag
781agaccatgtg ctatgcctac atgaagcagg aaggcgtgga agtgcgagtg gccagaatct
841tcaacacctt tgggccacgc atgcacatga acgatgggcg agtagtcagc aacttcatcc
901tgcaggcgct ccagggggag ccactcacgg tatacggatc cgggtctcag acaagggcgt
961tccagtacgt cagcgatcta gtgaatggcc tcgtggctct catgaacagc aacgtcagca
1021gcccggtcaa cctggggaac ccagaagaac acacaatcct agaatttgct cagttaatta
1081aaaaccttgt tggtagcgga agtgaaattc agtttctctc cgaagcccag gatgacccac
1141agaaaagaaa accagacatc aaaaaagcaa agctgatgct ggggtgggag cccgtggtcc
1201cgctggagga aggtttaaac aaagcaattc actacttccg taaagaactc gagtaccagg
1261caaataatca gtacatcccc aaaccaaagc ctgccagaat aaagaaagga cggactcgcc
1321acagctgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1381gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1441acctctggat ta

Download FASTA (ORF) (Full)