Transcript: Mouse XM_006496228.3

PREDICTED: Mus musculus UDP-glucuronate decarboxylase 1 (Uxs1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Uxs1 (67883)
Length:
3369
CDS:
230..988

Additional Resources:

NCBI RefSeq record:
XM_006496228.3
NBCI Gene record:
Uxs1 (67883)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006496228.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305364 TGGAATTTGCTCAGTTAATTA pLKO_005 720 CDS 100% 15.000 21.000 N Uxs1 n/a
2 TRCN0000305305 ACGTAAGTGATCTGGTGAATG pLKO_005 627 CDS 100% 10.800 15.120 N Uxs1 n/a
3 TRCN0000305366 GGCCGAGAATGCACATGAATG pLKO_005 513 CDS 100% 10.800 15.120 N Uxs1 n/a
4 TRCN0000114477 CCAGGCTAATAACCAGTACAT pLKO.1 916 CDS 100% 4.950 6.930 N Uxs1 n/a
5 TRCN0000114479 GAAAGCAAGATTGAAGAGATT pLKO.1 60 5UTR 100% 4.950 3.465 N Uxs1 n/a
6 TRCN0000114478 GCAAGGATCTTCAACACCTTT pLKO.1 491 CDS 100% 4.950 3.465 N Uxs1 n/a
7 TRCN0000351219 GCAAGGATCTTCAACACCTTT pLKO_005 491 CDS 100% 4.950 3.465 N Uxs1 n/a
8 TRCN0000114476 GCTGAGAAGAACACTTGAGAT pLKO.1 1746 3UTR 100% 4.950 3.465 N Uxs1 n/a
9 TRCN0000114480 CGAAAGCAAGATTGAAGAGAT pLKO.1 59 5UTR 100% 4.950 2.970 N Uxs1 n/a
10 TRCN0000349301 CGAAAGCAAGATTGAAGAGAT pLKO_005 59 5UTR 100% 4.950 2.970 N Uxs1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006496228.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04176 pDONR223 100% 52.9% 59.7% None (many diffs) n/a
2 ccsbBroad304_04176 pLX_304 0% 52.9% 59.7% V5 (many diffs) n/a
3 TRCN0000471739 ACAAACCTAGATTATCTAGCTGTC pLX_317 38.9% 52.9% 59.7% V5 (many diffs) n/a
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