Construct: ORF ccsbBroad304_04332

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002729.1_s304c1, BRDN0000401953
Derived from:
ccsbBroadEn_04332
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACAD11 (84129)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04332
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84129 ACAD11 acyl-CoA dehydrogenase fami... NM_032169.5 100% 100%
2 human 84129 ACAD11 acyl-CoA dehydrogenase fami... NR_132428.1 59.4% 1_380del;1575_1576ins217;2504_3353del
3 human 84129 ACAD11 acyl-CoA dehydrogenase fami... NR_132426.1 55.9% 1_380del;2067_2676del;3331_4180del
4 human 84129 ACAD11 acyl-CoA dehydrogenase fami... NR_132427.1 52.2% (many diffs)
5 human 100532724 NPHP3-ACAD11 NPHP3-ACAD11 readthrough (N... NR_037804.1 29.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2409
ORF length:
2340
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gaagccaggt gctactggcg agtccgattt ggccgaagtg ctgccccagc
121acaagttcga cagcaagtcc ctggaggcct acctaaacca gcacttgtct ggctttgggg
181ccgaacgtga ggctacgctg accattgccc agtacagagc aggaaagtcc aatccaacct
241tttatctcca gaagggcttt caaacatatg tgctcaggaa aaaaccacca ggttcacttc
301ttcctaaagc acatcagatt gatagagaat ttaaagtcca gaaagccttg ttttcaattg
361gattccccgt tcccaagcct atactgtact gcagtgatac ttctgtcatt ggaacagaat
421tttacgtaat ggaacatgtg cagggtcgaa tcttccgtga tttaacaatt cctggactta
481gcccagcaga acgttcagcc atatatgtgg ccacggtaga aacattggct cagttacatt
541ccttgaatat acagtcactg cagctggaag gatatggtat aggtgctggg tactgcaaaa
601gacaggtatc aacctggaca aagcaatatc aagctgcagc tcatcaggac atccctgcca
661tgcaacagct atcggagtgg ctaatgaaga acttgcccga taatgacaat gaagagaatt
721tgattcatgg agatttcaga ctagataaca tagttttcca ccctaaagag tgtcgagtta
781tagcagtgct ggattgggag ctgtcaacca ttggtcatcc tttgtcagac ttagctcatt
841tttccctgtt ctacttttgg ccaaggacag ttccaatgat aaatcaaggt tcttatagtg
901aaaactcagg gataccatca atggaagaac tgatttcaat atattgccgc tgcaggggaa
961ttaattctat tcttcctaac tggaatttct ttcttgccct ttcatatttt aagatggctg
1021gaatagcaca gggagtatat agcagatatc ttctgggaaa taattcatct gaggatagct
1081ttttatttgc caatattgtg caacctctgg cagaaactgg actacaactc tccaaacgaa
1141ctttcagtac tgtactacca cagattgata ctactggaca gttgtttgta cagactcgga
1201aaggtcagga agttcttatt aaggtgaagc atttcatgaa acaacacatt cttccagctg
1261aaaaggaggt aactgagttc tatgttcaaa atgaaaattc agtggacaag tggggaaaac
1321ctttagtgat tgataaactc aaggaaatgg ccaaagtcga gggtctctgg aacttgtttt
1381tgccagctgt cagcggactc agccacgtgg actatgcctt gattgctgaa gaaacaggaa
1441aatgcttttt tgctccagat gtctttaact gccaagcacc agacacaggg aatatggagg
1501ttctgcacct gtatggaagt gaggaacaga agaaacagtg gcttgagcct cttcttcaag
1561ggaacattac ctcttgcttc tgtatgacag aacctgatgt agcttcaagt gatgccacga
1621atattgaatg cagcatccaa cgagatgaag atagctatgt aattaacggc aaaaaatggt
1681ggagcagtgg agctgggaat cccaagtgca aaattgcaat tgttttggga agaactcaaa
1741atacttctct ctccagacac aaacagcaca gcatgattct tgttcccatg aacacacctg
1801gagtaaaaat aataaggcct ttgtcagttt ttggctacac agataatttt catggaggac
1861attttgagat ccattttaat caagtgcgag ttcctgccac aaatctaata ctaggtgaag
1921gtaggggatt tgaaatttcc caaggccgcc ttggacctgg cagaatccac cactgtatga
1981gaacagtagg tttggcggaa cgcgctttgc agatcatgtg tgagcgggca acacaaagga
2041tagctttcaa gaagaagttg tatgcacatg aggttgtggc tcactggatt gctgaaagcc
2101gcattgccat tgagaagatc cgcttgttga ctctgaaagc tgctcacagc atggacactc
2161tgggcagtgc tggcgctaag aaagagattg caatgatcaa agtggctgcc ccacgggctg
2221tcagcaaaat cgttgactgg gccatccagg tgtgcggagg tgctggtgtt tcccaggatt
2281accctctggc taacatgtat gctataaccc gagttttgcg tttagcagat ggacctgacg
2341aagttcatct ttcagcaatc gcaacaatgg agctgcggga ccaagccaaa agactgacag
2401ccaagatatt gccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
2461tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
2521tcaacctctg gatta

Download FASTA (ORF) (Full)