Transcript: Human NR_132426.1

Homo sapiens acyl-CoA dehydrogenase family member 11 (ACAD11), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2018-12-04
Taxon:
Homo sapiens (human)
Gene:
ACAD11 (84129)
Length:
4180
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_132426.1
NBCI Gene record:
ACAD11 (84129)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_132426.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423775 GTTTGAGCACAGGGTTAATTA pLKO_005 3425 3UTR 100% 15.000 7.500 Y ACAD11 n/a
2 TRCN0000028403 GCAGATATCTTCTGGGAAATA pLKO.1 1354 3UTR 100% 13.200 6.600 Y ACAD11 n/a
3 TRCN0000417096 GGTCGAATCTTCCGTGATTTA pLKO_005 756 3UTR 100% 13.200 6.600 Y ACAD11 n/a
4 TRCN0000028439 GCATCCAACGAGATGAAGATA pLKO.1 1945 3UTR 100% 5.625 2.813 Y ACAD11 n/a
5 TRCN0000028431 GCTCAGTTACATTCCTTGAAT pLKO.1 840 3UTR 100% 5.625 2.813 Y ACAD11 n/a
6 TRCN0000028422 GCACATCAGATTGATAGAGAA pLKO.1 621 3UTR 100% 4.950 2.475 Y ACAD11 n/a
7 TRCN0000028453 GCTGGCGCTAAGAAAGAGATT pLKO.1 3091 3UTR 100% 4.950 2.475 Y ACAD11 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_132426.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04332 pDONR223 100% 55.9% None 1_380del;2067_2676del;3331_4180del n/a
2 ccsbBroad304_04332 pLX_304 0% 55.9% V5 1_380del;2067_2676del;3331_4180del n/a
3 TRCN0000475369 CGGATCTAAAGCTCTTGGTTCGTA pLX_317 19.5% 55.9% V5 1_380del;2067_2676del;3331_4180del n/a
4 ccsbBroadEn_16027 pDONR223 0% 28% None 1_1547del;2067_2676del;3331_4180del n/a
5 ccsbBroad304_16027 pLX_304 0% 28% V5 1_1547del;2067_2676del;3331_4180del n/a
6 TRCN0000469208 ACTGCCTTGCTGATTTAACTCACA pLX_317 30.1% 28% V5 (many diffs) n/a
Download CSV