Construct: ORF ccsbBroad304_04593

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004367.1_s304c1, BRDN0000402322
Derived from:
ccsbBroadEn_04593
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE2Q2 (92912)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04593
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92912 UBE2Q2 ubiquitin conjugating enzym... NM_173469.4 100% 100%
2 human 92912 UBE2Q2 ubiquitin conjugating enzym... NM_001284382.2 90.6% 90.6% 281_282ins105
3 human 92912 UBE2Q2 ubiquitin conjugating enzym... NM_001145335.1 87.5% 83.2% (many diffs)
4 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_024450107.1 80.4% 79.2% (many diffs)
5 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_005254788.2 78.9% 78.9% 588_589ins237
6 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_005254787.2 78.2% 77.5% (many diffs)
7 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_017022728.2 69.6% 69.6% 281_282ins105;483_484ins237
8 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_017022727.2 69.1% 68.4% (many diffs)
9 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_017022726.1 66.8% 61.9% (many diffs)
10 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_024450108.1 59.4% 58.1% (many diffs)
11 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_006720770.2 57.7% 56.9% (many diffs)
12 human 92912 UBE2Q2 ubiquitin conjugating enzym... XM_011522228.2 52.8% 52.2% 588_589ins23;592_593insTCAG;594_595ins504
13 human 92912 UBE2Q2 ubiquitin conjugating enzym... XR_001751420.2 34.1% 1_324del;912_913ins85;1365_2956del
14 human 92912 UBE2Q2 ubiquitin conjugating enzym... XR_002957691.1 34% (many diffs)
15 human 92912 UBE2Q2 ubiquitin conjugating enzym... XR_001751421.2 32.1% 1_324del;912_913ins146;1304_2895del
16 human 92912 UBE2Q2 ubiquitin conjugating enzym... XR_002957692.1 29.8% (many diffs)
17 mouse 109161 Ube2q2 ubiquitin-conjugating enzym... NM_180600.3 92.9% 94.7% (many diffs)
18 mouse 109161 Ube2q2 ubiquitin-conjugating enzym... NM_001346657.1 83.9% 86% (many diffs)
19 mouse 109161 Ube2q2 ubiquitin-conjugating enzym... NM_001346658.1 64.1% 66.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1191
ORF length:
1125
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc cgtgtcaggg ctcaaggccg agctgaagtt cctggcgtcc atcttcgaca
121agaaccacga gcgattccgc atcgtcagtt ggaagctgga cgagctgcac tgccagttcc
181tggtgccgca gcagggcagc ccgcactcgc tgccgccgcc actcacgctc cactgcaaca
241tcacggaatc ctatccatct tcttcaccga tatggtttgt ggattctgaa gacccaaatc
301tgacatcagt tctggaacgt ctagaagata ctaagaacaa caatttgctt cgtcagcaat
361tgaagtggtt gatatgtgaa ctctgcagtt tatataacct tcctaagcac ctggatgttg
421agatgctaga tcaaccacta cccacgggtc agaatgggac aacagaagaa gtgacttcag
481aagaagagga agaagaagaa gagatggctg aagatataga agacttagat cactatgaga
541tgaaggaaga agagcctatt agtgggaaaa agtcagagga tgaaggaatt gaaaaagaaa
601atttggcaat attagagaaa attaggaaga ctcaaaggca agaccattta aatggtgcag
661tgtctgggtc agtgcaagct tcagatagac ttatgaaaga gctcagggac atatacagat
721cacagagtta taaaacaggg atttattcag tggaactcat aaatgacagt ttatatgact
781ggcatgttaa actgcagaag gttgaccctg atagtccttt gcacagtgat cttcagatct
841taaaagaaaa agaaggcata gaatatattt tgcttaactt ctcttttaag gataactttc
901catttgatcc tccatttgtt cgagtggtgt tacctgttct ctcaggaggg tatgtattgg
961gtggaggagc attatgtatg gaacttctca caaaacaggg ctggagcagt gcctactcaa
1021tagaatcggt catcatgcaa ataaatgcca ccttagtcaa aggcaaagcc agagtgcagt
1081ttggagcaaa taagaatcaa tataatctag caagagccca acaatcctat aattccattg
1141tacagataca tgagaaaaat ggctggtaca cccctccaaa ggaagatggc tacccaactt
1201tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1261agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)