Construct: ORF ccsbBroad304_04964

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006033.1_s304c1, BRDN0000400811
Derived from:
ccsbBroadEn_04964
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT9 (143425)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04964
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 143425 SYT9 synaptotagmin 9 NM_175733.4 99.9% 100% 351T>C
2 human 143425 SYT9 synaptotagmin 9 XM_011519904.2 99.1% 99.3% 351T>C;1467_1468insAAAC;1469_1476delCTCATGGGinsA
3 human 143425 SYT9 synaptotagmin 9 XM_011519901.2 86.9% 86.7% (many diffs)
4 human 143425 SYT9 synaptotagmin 9 XM_011519900.2 86.4% 86.2% (many diffs)
5 human 143425 SYT9 synaptotagmin 9 XM_011519902.2 80.1% 77.7% (many diffs)
6 human 143425 SYT9 synaptotagmin 9 XM_011519906.2 71.2% 70.8% (many diffs)
7 human 143425 SYT9 synaptotagmin 9 XM_011519907.2 70.9% 70.8% 351T>C;1046G>A;1047_1048ins426
8 human 143425 SYT9 synaptotagmin 9 XR_001747772.1 29.7% (many diffs)
9 human 143425 SYT9 synaptotagmin 9 XR_001747773.1 28.8% (many diffs)
10 mouse 60510 Syt9 synaptotagmin IX NM_021889.4 90.8% 97.5% (many diffs)
11 mouse 60510 Syt9 synaptotagmin IX XM_006508099.3 69.1% 65.6% (many diffs)
12 mouse 60510 Syt9 synaptotagmin IX XR_378262.4 31.3% (many diffs)
13 mouse 60510 Syt9 synaptotagmin IX XR_003946532.1 26.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1539
ORF length:
1473
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc cggggccagg gacgcgctct gtcaccaggc gctgcagctg ctggccgagc
121tctgtgcccg tggggccctg gagcacgaca gctgccagga tttcatttac cacctgcggg
181accgtgccag accccggctc cgcgacccag atatctcagt gagcctgctg acccttgtgg
241tcactgcctg tggtctcgct ctctttggcg tgtctctctt cgtatcttgg aaactctgct
301gggttccgtg gcgagaacga ggcctgccct ctggtagcaa agacaacaac caggagcccc
361ttaactacat ggacacagag accaatgagc aggagaacag tgaggacttc ctagaccctc
421ccacgccctg ccctgactcc tccatgaaga tcagccacac ctcccctgac attcccctct
481ccacccagac ggggatccag gagaactgtg cccatggcgt ccgcgtgcag cgccaagtca
541cagagccaac ctcgtcggcc cggcataatt caatccgaag acaactcaac ttgtcaaacc
601cggacttcaa tatccagcag cttcaaaaac aggaacagtt gactggaatt ggtagaatta
661aaccagagtt atataagcag aggtcattgg ataatgatga cgggagacgg agtaacagca
721aggcttgtgg gaaactgaac ttcattttaa aatatgactg tgacttagag cagctcatag
781tgaagattca caaagctgtc aatttgcccg ccaaggactt ttctgggact tcagatcctt
841atgtcaagat ctatttgctt cctgatcgga aaacaaaaca ccagactaaa gttcacagaa
901agaccctgaa ccctgtgttt gatgaagtgt ttttatttcc ggttccctac aatgaccttg
961aagcacggaa gcttcacttc tctgtgtacg actttgacag gttctctcgt catgacttaa
1021tcggccaagt ggtggtggat cacttcctag acttggctga tttccccagg gagtgcatcc
1081tttggaagga tatcgaatat gtcaccaatg acaacgtgga tctgggagag ctgatgtttt
1141ccctgtgcta tcttccaacg gctggcaggc tgaccattac cattataaaa gcaaggaatt
1201taaaggcaat ggacataaca ggagcatcag atccctatgt gaaagtctcg ctgatgtgtg
1261atggcagacg actgaagaag aggaaaacat ccaccaagag gaacaccttg aatcctgttt
1321acaacgaagc catagtcttt gatgtccctc ccgagaacat tgaccaaatc cacttgtcca
1381tagcagtcat ggactatgac cgtgtaggtc acaatgagat catcggcgtg tgtcaagtag
1441gcaacgaggc tgagaggctg ggcagagacc actggagtga aatgttgtca tatcctcgga
1501agcccattgc acactggcat tccctggtgg agaaacgatg cccaactttc ttgtacaaag
1561tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1621gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

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