Construct: ORF ccsbBroad304_05146
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017775.1_s304c1, BRDN0000411724
- Derived from:
- ccsbBroadEn_05146
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF800 (168850)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_05146
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 168850 | ZNF800 | zinc finger protein 800 | NM_176814.5 | 100% | 100% | |
| 2 | human | 168850 | ZNF800 | zinc finger protein 800 | XM_005250181.4 | 100% | 100% | |
| 3 | human | 168850 | ZNF800 | zinc finger protein 800 | XM_006715867.4 | 91.4% | 91.4% | 1993_2178del |
| 4 | human | 168850 | ZNF800 | zinc finger protein 800 | XM_006715868.4 | 91.4% | 91.4% | 1993_2178del |
| 5 | human | 168850 | ZNF800 | zinc finger protein 800 | XM_011515859.3 | 91.4% | 91.4% | 1993_2178del |
| 6 | human | 168850 | ZNF800 | zinc finger protein 800 | XM_006715869.4 | 87% | 87% | 58_59ins96;1897_2082del |
| 7 | mouse | 627049 | Zfp800 | zinc finger protein 800 | NM_001081678.1 | 92.6% | 94.2% | (many diffs) |
| 8 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505151.1 | 92.6% | 94.2% | (many diffs) |
| 9 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505152.3 | 92.6% | 94.2% | (many diffs) |
| 10 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505143.2 | 85.8% | 87.3% | (many diffs) |
| 11 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505144.2 | 85.8% | 87.3% | (many diffs) |
| 12 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505145.2 | 85.8% | 87.3% | (many diffs) |
| 13 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505146.3 | 85.8% | 87.3% | (many diffs) |
| 14 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505147.2 | 85.8% | 87.3% | (many diffs) |
| 15 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505148.3 | 85.8% | 87.3% | (many diffs) |
| 16 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505149.2 | 85.8% | 87.3% | (many diffs) |
| 17 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_006505150.3 | 85.8% | 87.3% | (many diffs) |
| 18 | mouse | 627049 | Zfp800 | zinc finger protein 800 | XM_011241073.2 | 85.8% | 87.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2061
- ORF length:
- 1992
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gcctttaagg gacaaatact gtcagactga ccaccatcat cacggatgct 121 gtgaaccagt ttatatcctg gaacctggag atcctccttt gttacagcaa ccactacaga 181 catccaaatc tggtattcaa caaataattg agtgctttcg atcaggaact aaacaactta 241 agcatatttt attaaaagat gtggacacta tttttgaatg taagttatgc cgcagtctct 301 tcagaggatt accaaattta attacccata aaaaattcta ctgcccacca agtctccaga 361 tggatgacaa ccttcctgat gtaaatgata aacaaagcca agccataaat gatctcctag 421 aagccatata tccaagtgtg gacaaacgag aatatattat taagctagaa cccatagaaa 481 ctaatcaaaa tgcagtattt caatatattt cgaggactga taatcctatt gaagtcacag 541 agtcaagcag tactcctgaa caaaccgaag ttcagataca ggaaactagc actgaacagt 601 caaaaacagt accggttaca gatacagagg tggaaactgt agagccccct cctgttgaga 661 ttgttacaga tgaagttgca cctacatctg atgaacaacc tcaggagtcg caggctgact 721 tggaaacttc tgacaattct gattttggtc accagttgat atgttgtctt tgtagaaaag 781 aattcaattc tagacgaggt gttcgccgtc acattcgaaa agtacacaag aaaaagatgg 841 aagaactaaa aaagtacatt gaaacacgaa agaatccaaa ccaatcctct aaaggacgca 901 gtaagaatgt tctagttcca ttaagtagga gttgtccagt atgttgtaaa tcatttgcta 961 caaaagcgaa tgtaaggagg cattttgatg aagttcatag aggactaagg agggattcaa 1021 ttactcctga tatagcaaca aagcctgggc aacctttgtt cctggattct atttctccta 1081 aaaaatcttt taagactcga aaacaaaagt cttcttcaaa ggctgaatac aatttaactg 1141 catgcaaatg cctcctttgc aagaggaaat atagttcaca aataatgctt aaaagacata 1201 tgcaaattgt ccacaagata actctttctg gaacaaactc taaaagagaa aaaggcccta 1261 ataatactgc caacagttca gaaataaaag ttaaagttga accagcagat tctgtagaat 1321 cttcaccccc ttccattacc cattctccac agaatgaatt aaagggaaca aatcattcaa 1381 atgaaaaaaa gaacacaccg gcagcacaga aaaataaagt taaacaagac tctgaaagcc 1441 ctaaatcaac tagtccgtcg gctgcaggtg gccagcaaaa aaccagaaaa ccaaaacttt 1501 cagctggctt tgactttaag caactttact gtaaactttg taaacgtcag tttacttcca 1561 aacagaactt gactaaacac atcgagttgc acacagatgg aaataacatt tatgttaaat 1621 tctacaagtg tcctctttgc acttatgaaa ctcgtcggaa acgtgatgtg atacgacata 1681 taactgtggt tcataaaaag tcatctcgtt atcttgggaa aataacagcc agtttagaga 1741 tcagagctat aaaaaagcct attgattttg ttctaaataa agtggcaaaa agaggccctt 1801 cgagggatga agcaaaacat agtgattcaa aacatgatgg cacttctaac tctcctagta 1861 aaaagtatga agtagctgac gtcggtattg aagtaaaagt cacaaaaaac ttttctcttc 1921 acagatgcaa taaatgtgga aaggcatttg ccaaaaagac ttaccttgaa catcataaga 1981 aaactcataa ggcaaatgct tccaattcac ctgaaggaaa caaaaccaaa ggccgaagta 2041 caagatctaa ggctcttgtc ttgccaactt tcttgtacaa agtggttggt aagcctatcc 2101 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 2161 ttaagtcgac aatcaacctc tggatta