Construct: ORF ccsbBroad304_06455
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010072.1_s304c1, BRDN0000399229
- Derived from:
- ccsbBroadEn_06455
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INPP4A (3631)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_06455
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001134225.2 | 99.9% | 99.8% | 2285G>A |
2 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001134224.1 | 99.4% | 99.3% | 1164_1178del;2300G>A |
3 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712503.3 | 99.3% | 99.2% | 1164_1181del;2303G>A |
4 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_011511123.2 | 96% | 95.1% | (many diffs) |
5 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001351428.1 | 95.9% | 95.7% | 1705_1706ins117;2168G>A |
6 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_011511124.2 | 95.9% | 95.7% | 1705_1706ins117;2168G>A |
7 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712501.3 | 95.5% | 93.1% | (many diffs) |
8 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001351427.1 | 95.4% | 95.2% | 1164_1178del;1720_1721ins117;2183G>A |
9 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_004027.3 | 95.4% | 95.2% | 1164_1178del;1720_1721ins117;2183G>A |
10 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001351425.2 | 95.3% | 95.1% | 1164_1181del;1723_1724ins117;2186G>A |
11 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001351426.1 | 95.3% | 95.1% | 1164_1181del;1723_1724ins117;2186G>A |
12 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712505.3 | 95.3% | 94.7% | (many diffs) |
13 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_017003996.1 | 95.1% | 95% | (many diffs) |
14 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712500.3 | 95.1% | 92.6% | (many diffs) |
15 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712499.3 | 95% | 92.5% | (many diffs) |
16 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_024452876.1 | 95% | 92.5% | (many diffs) |
17 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712508.3 | 94.9% | 94.8% | 1164_1181del;2303G>A;2805_2806ins129 |
18 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001351429.1 | 94.8% | 94.7% | 1703_1704ins150;2135G>A |
19 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_017004001.1 | 94.8% | 94.7% | 1703_1704ins150;2135G>A |
20 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_017004000.1 | 94.2% | 94.1% | 1164_1181del;1721_1722ins150;2153G>A |
21 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712502.3 | 93.9% | 91.4% | (many diffs) |
22 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_011511122.2 | 93.5% | 91.1% | (many diffs) |
23 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_017003994.1 | 91.6% | 89.1% | (many diffs) |
24 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_017004003.1 | 91.3% | 90.7% | (many diffs) |
25 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001566.2 | 91.2% | 88.7% | (many diffs) |
26 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | NM_001351424.1 | 91.1% | 88.6% | (many diffs) |
27 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712504.3 | 91.1% | 88.6% | (many diffs) |
28 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_017003995.1 | 90.1% | 87.7% | (many diffs) |
29 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_006712506.3 | 90% | 87.6% | (many diffs) |
30 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_011511125.2 | 83.9% | 81.6% | (many diffs) |
31 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XR_001738737.1 | 59.8% | (many diffs) | |
32 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XM_011511127.2 | 58.5% | 55.2% | (many diffs) |
33 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XR_922916.2 | 41.7% | (many diffs) | |
34 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XR_922915.2 | 24% | (many diffs) | |
35 | human | 3631 | INPP4A | inositol polyphosphate-4-ph... | XR_001738738.1 | 22.2% | (many diffs) | |
36 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496013.1 | 89.7% | 95.8% | (many diffs) |
37 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | NM_001290797.1 | 89.2% | 95.3% | (many diffs) |
38 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496011.1 | 89.1% | 95.2% | (many diffs) |
39 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496020.1 | 86.3% | 92.7% | (many diffs) |
40 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496019.1 | 85.9% | 92.3% | (many diffs) |
41 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496009.1 | 85.8% | 89.2% | (many diffs) |
42 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | NM_030266.4 | 85.8% | 92.2% | (many diffs) |
43 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496008.1 | 85.4% | 88.8% | (many diffs) |
44 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496006.1 | 85.3% | 88.7% | (many diffs) |
45 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_011238525.2 | 85.3% | 88.7% | (many diffs) |
46 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_017320934.1 | 85.3% | 88.7% | (many diffs) |
47 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496010.1 | 84.3% | 87.6% | (many diffs) |
48 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496016.3 | 82.5% | 86.2% | (many diffs) |
49 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496015.1 | 82.1% | 85.8% | (many diffs) |
50 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496014.1 | 82% | 85.7% | (many diffs) |
51 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496018.1 | 81.1% | 84.8% | (many diffs) |
52 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_006496017.1 | 81% | 84.7% | (many diffs) |
53 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | NM_172971.3 | 57.9% | 59.6% | (many diffs) |
54 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | XM_017320952.1 | 57.9% | 59.6% | (many diffs) |
55 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | NM_001290799.1 | 56.9% | 58.7% | (many diffs) |
56 | mouse | 269180 | Inpp4a | inositol polyphosphate-4-ph... | NM_001290798.1 | 56.9% | 58.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2982
- ORF length:
- 2916
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgac agcaagagag cacagccctc gccatggtgc cagggcccgt gcaatgcagc 121 gggcttccac catcgacgtg gcggccgaca tgctgggcct ctctctggca ggaaatatac 181 aagacccaga tgagcccatt ttagaattta gcttagcttg cagtgagctg catactccat 241 cgctagatcg aaagccaaat agttttgttg cggtgagtgt caccacccct cctcaggcat 301 tctggacgaa gcatgcacag acggagatca ttgagggaac caacaatcct atatttctaa 361 gcagtattgc cttctttcaa gactctctta tcaatcagat gacacaagtc aaactctccg 421 tgtatgatgt caaagataga tctcagggaa caatgtattt actgggctct ggaacgttca 481 ttgtcaaaga tctgctccag gacaggcatc ataggttgca tttaacacta aggtctgcag 541 agagtgaccg tgtaggtaac atcaccgtga ttggctggca gatggaggag aagtcagacc 601 aacggccccc tgtgacccgg tctgtggaca ctgtcaatgg gaggatggtt cttcctgtcg 661 atgagagctt gacggaggcg ttaggaatcc gatccaaata cgcttcattg cgaaaggaca 721 ctttgctgaa atcggtgttc ggtggtgcca tctgccgcat gtaccggttt ccaaccactg 781 atggtaacca tttgcggatc ctggagcaga tggcagagag cgtgctctcc ctgcacgtgc 841 cccggcagtt cgtgaagctc ctactagagg aagatgcagc cagagtgtgt gagctggagg 901 agctgggaga gctgtcccct tgctgggaga gcctccggcg ccaaattgtc acccagtacc 961 agaccatcat cctcacatac caggagaacc tgaccgacct ccatcagtac agagggccct 1021 cgtttaaagc aagcagtttg aaagcagata aaaagttaga atttgttccc acaaacttgc 1081 acatacaaag gatgagagtt caagacgatg gaggatcaga tcagaactac gacatcgtca 1141 ccattggggc gccagcagca cactgccaag gttttaagtc aggaggtctc cgcaaaaagc 1201 tgcacaaatt tgaagagacc aagaaacata catcatctgg ctgccagtcc ataatctaca 1261 taccccagga tgttgtcaga gccaaggaga tcatcgccca gatcaacacc ctgaaaaccc 1321 aagtgagtta ctacgcagag cggctgtcaa gggcagccaa ggacaggtct gccactggcc 1381 ttgagaggac actcgccatc ttggcagaca agacacggca gctggtcacg gtctgcgact 1441 gcaagctcct ggccaactcc atccatgggc tgaacgctgc acggcctgac tacattgcct 1501 ccaaggcctc tcccacttcg actgaggagg agcaggtgat gcttagaaat gaccaggaca 1561 ccctcatggc ccggtggaca gggagaaaca gccgatcttc cctgcaggtg gactggcacg 1621 aggaggagtg ggagaaagtg tggctgaacg tggacaagag cctagagtgc atcattcagc 1681 gtgtggacaa gctgctgcag aaggagcggc tgcatggcga gggctgtgag gatgtcttcc 1741 cctgtgcagg cagctgcacc agcaagaaag gtaacccgga cagccacgcc tactggatca 1801 gaccagaaga ccccttctgt gatgtcccct cctcaccatg cccctccacc atgccctcca 1861 ctgcatgcca tcctcatctg accacacatt gcagtccccc tcctgaagag tccagcccag 1921 gtgaatggag tgaggccctt tacccgctgc tgaccactct caccgactgc gtggccatga 1981 tgagtgacaa ggccaagaag gccatggtat tcctgctcat gcaggacagc gcgcccacca 2041 tagccaccta cctgagcctg cagtaccgcc gtgacgtggt cttctgccag acgctgaccg 2101 ccctcatctg cggcttcatc attaagctga ggaactgcct gcatgacgac ggcttcctgc 2161 gccagctcta caccatcggg ctgctggccc agttcgagag cctgctgagc acctacgggg 2221 aggagctggc aatgctggag gacatgagcc ttgggatcat ggacttgagg aacgtgacct 2281 tcaaagtcac tcaggccact tccagcgcct ccgcagacat gctgcccgtc atcacaggaa 2341 atcgcgacga gtttaacgtg cgggtccctc tgccgggccc gctgtttgac gccttgcccc 2401 gggagatcca gagtggcatg ctgctgcgag tgcagcccgt cctcttcaac gtgggcatca 2461 atgagcagca gacactggcc gagaggtttg gcgatacgtc tttacaagaa gtcatcaacg 2521 tggagagttt ggtgcggtta aattcctact ttgagcagtt taaggaagtt ttgcctgagg 2581 attgcctgcc tcggtctcgc agtcagacgt gcctgccaga gctgctgcgg tttctgggtc 2641 agaacgtgca tgcccggaag aataagaacg tcgacattct ctggcaagct gctgagatct 2701 gccgccgcct taatggggtc cggttcacca gctgcaagag cgctaaggac cgtacagcca 2761 tgtcggtgac actggagcag tgcctgatcc tgcaacacga gcatggcatg gccccgcagg 2821 tcttcaccca ggccctggag tgcatgcgca gtgagggttg tcgaagagaa aatacaatga 2881 agaatgttgg aagtcgcaaa tatgcattta attccctgca gctgaaggct ttccccaagc 2941 attacaggcc tcccgaaggg acttacggaa aagttgaaac gtgcccaact ttcttgtaca 3001 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 3061 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta