Construct: ORF ccsbBroad304_06614

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007851.1_s304c1, BRDN0000402376
Derived from:
ccsbBroadEn_06614
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAP1L1 (4673)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06614
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4673 NAP1L1 nucleosome assembly protein... NM_001330231.2 99.8% 100% 300C>T;471A>G
2 human 4673 NAP1L1 nucleosome assembly protein... NM_004537.7 99.8% 100% 300C>T;471A>G
3 human 4673 NAP1L1 nucleosome assembly protein... NM_139207.5 99.8% 100% 300C>T;471A>G
4 human 4673 NAP1L1 nucleosome assembly protein... XM_011538393.2 99.8% 100% 300C>T;471A>G
5 human 4673 NAP1L1 nucleosome assembly protein... XM_017019338.1 99.8% 100% 300C>T;471A>G
6 human 4673 NAP1L1 nucleosome assembly protein... NM_001307924.3 95.1% 92.1% (many diffs)
7 human 4673 NAP1L1 nucleosome assembly protein... NM_001330232.2 83.5% 82.6% (many diffs)
8 human 4673 NAP1L1 nucleosome assembly protein... XM_017019339.1 83.5% 82.6% (many diffs)
9 human 4673 NAP1L1 nucleosome assembly protein... XM_017019340.2 83.5% 82.6% (many diffs)
10 human 4673 NAP1L1 nucleosome assembly protein... XM_024448983.1 83.5% 82.6% (many diffs)
11 human 4673 NAP1L1 nucleosome assembly protein... XR_001748715.2 37.2% (many diffs)
12 human 4673 NAP1L1 nucleosome assembly protein... XR_001748714.2 36.9% (many diffs)
13 human 4673 NAP1L1 nucleosome assembly protein... XR_001748716.1 34.1% (many diffs)
14 human 4673 NAP1L1 nucleosome assembly protein... XR_001748717.2 34% (many diffs)
15 human 4673 NAP1L1 nucleosome assembly protein... XR_002957328.1 30.4% (many diffs)
16 mouse 53605 Nap1l1 nucleosome assembly protein... NM_015781.4 93.4% 98.2% (many diffs)
17 mouse 53605 Nap1l1 nucleosome assembly protein... NM_001146707.1 87.4% 91.8% (many diffs)
18 mouse 53605 Nap1l1 nucleosome assembly protein... XM_006513890.3 87.4% 91.8% (many diffs)
19 mouse 53605 Nap1l1 nucleosome assembly protein... XM_006513893.3 77% 81.5% (many diffs)
20 mouse 53605 Nap1l1 nucleosome assembly protein... XR_001779557.1 44.9% (many diffs)
21 mouse 53605 Nap1l1 nucleosome assembly protein... XR_001779558.1 27.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1239
ORF length:
1173
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttngcatggc agacattgac aacaaagaac agtctgaact tgatcaagat ttggatgatg
121ttgaagaagt agaagaagag gaaactggtg aagaaacaaa actcaaagca cgtcagctaa
181ctgttcagat gatgcaaaat cctcagattc ttgcagccct tcaagaaaga cttgatggtc
241tggtagaaac accaacagga tacattgaaa gcctgcctag ggtagttaaa agacgagtga
301atgctctcaa aaacctgcaa gttaaatgtg cacagataga agccaaattc tatgaggaag
361ttcatgatct tgaaaggaag tatgctgttc tctatcagcc tctatttgat aagcgatttg
421aaattattaa tgcaatttat gaacctacgg aagaagaatg tgaatggaaa ccagatgaag
481aagatgagat ttcggaggaa ttgaaagaaa aggccaagat tgaagatgag aaaaaggatg
541aagaaaaaga agaccccaaa ggaattcctg aattttggtt aactgttttt aagaatgttg
601acttgctcag tgatatggtt caggaacacg atgaacctat tctgaagcac ttgaaagata
661ttaaagtgaa gttctcagat gctggccagc ctatgagttt tgtcttagaa tttcactttg
721aacccaatga atattttaca aatgaagtgc tgacaaagac atacaggatg aggtcagaac
781cagatgattc tgatcccttt tcttttgatg gaccagaaat tatgggttgt acagggtgcc
841agatagattg gaaaaaagga aagaatgtca ctttgaaaac tattaagaag aagcagaaac
901acaagggacg tgggacagtt cgtactgtga ctaaaacagt ttccaatgac tctttcttta
961acttttttgc ccctcctgaa gttcctgaga gtggagatct ggatgatgat gctgaagcta
1021tccttgctgc agacttcgaa attggtcact ttttacgtga gcgtataatc ccaagatcag
1081tgttatattt tactggagaa gctattgaag atgatgatga tgattatgat gaagaaggtg
1141aagaagcgga tgaggaaggg gaagaagaag gagatgagga aaatgatcca gactatgacc
1201caaagaagga tcaaaaccca gcagagtgca agcagcagtg cccaactttc ttgtacaaag
1261tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1321gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)