Construct: ORF ccsbBroad304_07267

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009932.1_s304c1, BRDN0000406473
Derived from:
ccsbBroadEn_07267
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDLIM4 (8572)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07267
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8572 PDLIM4 PDZ and LIM domain 4 NM_003687.4 99.8% 100% 255T>C
2 human 8572 PDLIM4 PDZ and LIM domain 4 XM_017010002.1 76.3% 76.3% 92_93ins234
3 human 8572 PDLIM4 PDZ and LIM domain 4 NM_001131027.1 74.4% 69.1% 255T>C;670_671ins118;738_739ins134
4 mouse 30794 Pdlim4 PDZ and LIM domain 4 NM_019417.3 85.3% 90.9% (many diffs)
5 mouse 30794 Pdlim4 PDZ and LIM domain 4 XM_030246067.1 69.5% 73.4% (many diffs)
6 mouse 30794 Pdlim4 PDZ and LIM domain 4 XM_006533511.2 63.8% 61% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1056
ORF length:
990
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ccattccgtg accctgcgcg ggccttcgcc ctggggcttc cgcctggtgg
121gcggccggga cttcagcgcg cccctcacca tctcacgggt ccatgctggc agcaaggctg
181cattggctgc cctgtgccca ggagacctga tccaggccat caatggtgag agcacagagc
241tcatgacaca cctggaggca cagaaccgca tcaagggctg ccacgatcac ctcacactgt
301ctgtgagcag gcctgagggc aggagctggc ccagtgcccc tgatgacagc aaggctcagg
361cacacaggat ccacatcgat cctgagatcc aggacggcag cccaacaacc agcaggcggc
421cctcaggcac cgggactggg ccagaagatg gcagaccaag cctgggatct ccatatggac
481aaccccctcg ctttccagtc cctcacaatg gcagcagcga ggccaccctg ccagcccaga
541tgagcaccct gcatgtgtct ccacccccca gcgctgaccc agccagaggc ctcccgcgga
601gccgggactg cagagtcgac ctgggctccg aggtgtacag gatgctgcgg gagccagccg
661agcccgtggc cgcggagccc aagcagtcag gctccttccg ctacttgcag ggcatgctag
721aggccggcga gggcggggat tggcccgggc ctggcggccc ccggaacctc aagcccacgg
781ccagcaagct gggcgctccg ctgagcggcc tgcaggggct gcccgagtgc acgcgctgcg
841gccacggcat cgtgggcacc atcgtcaagg cacgggacaa gctctaccat cccgagtgct
901tcatgtgcag tgactgcggc ctgaacctca agcagcgtgg ttacttcttt ctggacgagc
961ggctctactg tgagagccac gccaaggcgc gcgtgaagcc gcccgagggc tacgacgtgg
1021tggcggtgta ccccaatgcc aaggtggaac tcgtctgccc aactttcttg tacaaagtgg
1081ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1141ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)