Construct: ORF ccsbBroad304_07364

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003134.1_s304c1, BRDN0000462199
Derived from:
ccsbBroadEn_07364
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RABEP1 (9135)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07364
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9135 RABEP1 rabaptin, RAB GTPase bindin... NM_004703.6 99.8% 100% (many diffs)
2 human 9135 RABEP1 rabaptin, RAB GTPase bindin... XM_011524060.2 97.3% 97.5% (many diffs)
3 human 9135 RABEP1 rabaptin, RAB GTPase bindin... NM_001083585.3 96% 96.1% (many diffs)
4 human 9135 RABEP1 rabaptin, RAB GTPase bindin... NM_001291581.2 94.8% 95% (many diffs)
5 human 9135 RABEP1 rabaptin, RAB GTPase bindin... XM_017025295.2 63.8% 63.1% (many diffs)
6 human 9135 RABEP1 rabaptin, RAB GTPase bindin... XM_017025294.2 62.2% 61.5% (many diffs)
7 human 9135 RABEP1 rabaptin, RAB GTPase bindin... NM_001291582.2 21.3% 20.8% (many diffs)
8 mouse 54189 Rabep1 rabaptin, RAB GTPase bindin... NM_019400.3 90.6% 96.2% (many diffs)
9 mouse 54189 Rabep1 rabaptin, RAB GTPase bindin... XM_006533750.3 86.7% 92.2% (many diffs)
10 mouse 54189 Rabep1 rabaptin, RAB GTPase bindin... NM_001291142.1 86.4% 91.6% (many diffs)
11 mouse 54189 Rabep1 rabaptin, RAB GTPase bindin... NM_001291141.1 85.8% 91.2% (many diffs)
12 mouse 54189 Rabep1 rabaptin, RAB GTPase bindin... NM_001291143.1 81.4% 86.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2652
ORF length:
2586
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gcagccgggc ccggcttccc agcctgacgt ttctcttcag caacgggtag
121cagaattgga aaaaattaat gcagaatttt tacgtgcaca acagcagctt gaacaagaat
181ttaatcaaaa gagagcaaaa tttaaggagt tatatttggc taaagaggag gatctgaaga
241ggcaaaatgc agtattacaa gctgcacaag atgatttggg acaccttcga acccagctgt
301gggaagctca agcagagatg gagaatatta aggcgattgc cacagtctct gagaacacca
361agcaagaagc tatagatgaa gtgaaaagac agtggagaga agaagttgct tcacttcagg
421ctgttatgaa agaaacagtt cgtgactatg agcaccagtt ccaccttagg ctggagcagg
481agcgaacaca gtgggcacag tatagagaat ccgcagagag ggaaatagct gatttaagaa
541gaaggctgtc tgaaggtcaa gaggaggaaa atttagaaaa tgaaatgaaa aaggcccaag
601aggatgctga gaaacttcgg tccgttgtga tgccaatgga aaaggaaatt gcagctttga
661aggataaact gacagaggct gaagacaaaa ttaaagagct ggaggcctca aaggttaaag
721aactgaatca ttatctggaa gctgagaaat cttgtaggac tgatctagag atgtatgtag
781ctgttttgaa tactcagaaa tctgttctac aggaagatgc tgagaaactg cggaaagaat
841tgcatgaagt ttgccatctc ttggagcaag agcgacaaca acacaaccag ttaaaacata
901cgtggcagaa ggccaatgac cagtttctgg aatctcagcg tttactgatg agagacatgc
961agcgaatgga gattgtgcta acttcagaac agctccgaca agttgaagaa ctgaagaaga
1021aagatcagga ggatgatgaa caacaaagac tcaataagag aaaggatcac aaaaaagcag
1081atgttgagga agaaataaaa ataccagtag tgtgtgcttt aactcaagaa gaatcttcag
1141cccagttatc aaatgaagag gagcatttag acagcacccg tggctcagtt cattccttag
1201atgcaggctt gctgttgcca tctggagatc ctttcagtaa atcggacaat gacatgttta
1261aagatggact caggagagca cagtctacag acagcttggg aacctcgggc tcattgcaat
1321ccaaagcttt aggctataac tacaaagcaa aatctgctgg aaacctggac gagtcagatt
1381ttggaccact ggtaggagca gattcagtgt ctgagaactt tgatactgca tcccttgggt
1441cactccagat gccaagtggg tttatgttaa ccaaagatca ggaaagagca atcaaggcga
1501tgacaccaga acaagaagag acagcgtccc tcctctccag cgttacccag ggcatggaga
1561gtgcctatgt gtcccctagt ggttatcgtt tagttagtga aacagaatgg aatctcttgc
1621agaaagaggt acataatgct ggaaataaac ttggtagacg ttgtgatatg tgttccaatt
1681acgaaaaaca gttacaagga attcagattc aggaggctga aacgagagac caggtgaaaa
1741aactacagct gatgctaagg caagctaatg accagttaga gaagacaatg aaagataagc
1801aggagctgga agacttcata aagcaaagca gcgaagattc gagtcaccag atctctgcac
1861tcgtcctaag agcccaggcc tccgagatct tacttgaaga gttacagcag gggctttccc
1921aggcaaagag ggatgttcag gaacagatgg cggtgctgat gcagtcacgg gaacaggttt
1981cagaagagct ggtgaggtta cagaaagata atgacagtct ccagggaaag cacagcctgc
2041atgtgtcatt acagcaagca gaagacttca tcctcccaga cactacagag gcactgcggg
2101agttggtatt aaaataccgc gaggacatca ttaatgtgcg gacagcagca gaccacgtag
2161aagaaaagct gaaggctgag atacttttcc taaaagagca gatccaagca gaacagtgtt
2221taaaagaaaa tcttgaagaa actctgcaac tagaaataga aaactgcaag gaggaaatag
2281cttctatttc tagcctaaaa gctgaattag aaagaataaa agtggaaaaa ggacagttgg
2341agtccacatt aagagagaag tctcaacagc ttgagagtct tcaggaaata aagatcagtt
2401tggaagagca gttaaagaaa gagactgctg ctaaggctac cgttgaacag ctaatgtttg
2461aagagaagaa caaagctcag agattacaga cagaattaga tgtcagtgag caagtccaga
2521gagattttgt aaagctttca cagacccttc aggtgcagtt agagcggatc cggcaagctg
2581actccttgga gagaatccgg gcaattctga atgatactaa actgacagac attaaccagc
2641ttcctgagac atgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
2701tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
2761caatcaacct ctggatta

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