Construct: ORF ccsbBroad304_07701

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006736.1_s304c1, BRDN0000400024
Derived from:
ccsbBroadEn_07701
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RUNDC3A (10900)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07701
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10900 RUNDC3A RUN domain containing 3A NM_006695.4 99.9% 100% 729T>C
2 human 10900 RUNDC3A RUN domain containing 3A XM_017024040.2 98.9% 99% 221_222insAGCCTGTGCCCC;717T>C
3 human 10900 RUNDC3A RUN domain containing 3A NM_001144826.1 98.6% 98.7% 221_222insAGCCTGTGCCCCAGC;714T>C
4 human 10900 RUNDC3A RUN domain containing 3A XM_017024039.1 93.4% 93.5% 729T>C;1198_1281del
5 human 10900 RUNDC3A RUN domain containing 3A XM_017024038.2 93.2% 93.3% 729T>C;1198_1284del
6 human 10900 RUNDC3A RUN domain containing 3A NM_001144825.2 90% 89.7% (many diffs)
7 human 10900 RUNDC3A RUN domain containing 3A XM_024450548.1 89.1% 88.8% (many diffs)
8 human 10900 RUNDC3A RUN domain containing 3A XM_005256964.3 88.8% 88.5% (many diffs)
9 human 10900 RUNDC3A RUN domain containing 3A XM_017024035.1 85% 84.5% (many diffs)
10 human 10900 RUNDC3A RUN domain containing 3A XM_017024036.2 84.1% 83.7% (many diffs)
11 human 10900 RUNDC3A RUN domain containing 3A XM_017024037.1 83.9% 83.5% (many diffs)
12 human 10900 RUNDC3A RUN domain containing 3A XR_001752409.2 49% 1_250del;979T>C;1466_2477del
13 human 10900 RUNDC3A RUN domain containing 3A XR_001752408.2 47.3% (many diffs)
14 mouse 51799 Rundc3a RUN domain containing 3A XM_006533693.2 90.5% 96% (many diffs)
15 mouse 51799 Rundc3a RUN domain containing 3A XM_017314649.1 89.6% 95% (many diffs)
16 mouse 51799 Rundc3a RUN domain containing 3A XM_006533694.2 89.3% 94.8% (many diffs)
17 mouse 51799 Rundc3a RUN domain containing 3A NM_001252347.1 88.7% 94.1% (many diffs)
18 mouse 51799 Rundc3a RUN domain containing 3A XM_017314648.1 88.1% 93.5% (many diffs)
19 mouse 51799 Rundc3a RUN domain containing 3A XM_011249124.1 86.4% 91.7% (many diffs)
20 mouse 51799 Rundc3a RUN domain containing 3A NM_016759.4 81.5% 86.1% (many diffs)
21 mouse 51799 Rundc3a RUN domain containing 3A XM_017314647.1 80.7% 85.2% (many diffs)
22 mouse 51799 Rundc3a RUN domain containing 3A XM_006533690.1 80.1% 84.6% (many diffs)
23 mouse 51799 Rundc3a RUN domain containing 3A XM_006533689.1 79.6% 84% (many diffs)
24 mouse 51799 Rundc3a RUN domain containing 3A XM_006533691.1 79.3% 83.7% (many diffs)
25 mouse 51799 Rundc3a RUN domain containing 3A XM_006533692.1 79.1% 83.5% (many diffs)
26 mouse 51799 Rundc3a RUN domain containing 3A XM_006533688.1 78.2% 82.6% (many diffs)
27 mouse 51799 Rundc3a RUN domain containing 3A XR_001780024.1 52.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1281
ORF length:
1215
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agcgagcttt gtccagacca ccatggctct ggggctgtcc tccaagaaag
121cgtcctctcg caacgtggct gtggagcgta agaacctgat caccgtgtgc aggttctctg
181tgaaaacgct gctggagaag tacacagcgg agcccatcga tgactcatcg gaggagtttg
241tcaattttgc agccatttta gagcagatcc tcagccaccg cttcaaagcc tgtgccccag
301caggtccagt gagctggttc agctcagacg ggcagcgggg cttttgggac tatatccggc
361tggcctgcag caaagtgccc aacaactgtg tgagcagcat cgagaacatg gagaacatca
421gcacagcccg ggccaagggc cgggcatgga tccgggtggc actgatggag aagcgcatgt
481cagaatacat caccacggct ctgcgtgaca cccggaccac cagacggttc tatgactctg
541gagccatcat gctgcgggat gaagccacca tcctcaccgg aatgctgatc ggactgagcg
601ccatcgactt cagcttctgt ctaaaggggg aagtcctgga cgggaagacc cccgtggtca
661tcgattacac gccctaccta aagttcacgc agagctacga ctacctgacg gacgaggagg
721agcggcacag cgccgagagc agcacgagcg aggacaactc gcccgagcac ccgtacctcc
781cgctcgtcac cgacgaggac agctggtaca gcaagtggca caagatggag cagaagttcc
841gcatcgtcta cgcgcagaag ggctacctgg aggagctggt gcgtctgcgc gagtcgcagc
901tgaaggacct ggaggcggag aaccggcggc ttcagctgca gctggaggag gcggcggcgc
961agaaccagcg cgagaaacgg gagctggaag gcgtgatcct ggagctgcag gagcagctga
1021caggtctgat ccccagtgac cacgcccctc tggcccaggg ttccaaggag ctcactacac
1081ccctggtcaa tcaatggccc tcactgggaa cgcttaatgg ggccgagggc gccagcaact
1141ccaagctcta ccggagacac agcttcatga gcacggagcc gctgtcagct gaagccagtc
1201tgagctcgga ctcccagcgc ctgggagagg gcacgcggga cgaggagccc tggggtccca
1261tcggaagctc agagccaaat tacccaactt tcttgtacaa agtggttggt aagcctatcc
1321ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1381ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)