Construct: ORF ccsbBroad304_07716

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000743.1_s304c1, BRDN0000399800
Derived from:
ccsbBroadEn_07716
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB40B (10966)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07716
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10966 RAB40B RAB40B, member RAS oncogene... NM_006822.3 99.8% 99.6% 124C>A
2 human 282808 RAB40AL RAB40A like NM_001031834.1 90.2% 88.4% (many diffs)
3 human 10966 RAB40B RAB40B, member RAS oncogene... XM_011523528.2 89.3% 85.9% (many diffs)
4 human 142684 RAB40A RAB40A, member RAS oncogene... NM_080879.3 89.2% 87.7% (many diffs)
5 human 10966 RAB40B RAB40B, member RAS oncogene... XM_006722271.3 85.2% 83% (many diffs)
6 human 10966 RAB40B RAB40B, member RAS oncogene... XM_005256334.4 77.6% 75% (many diffs)
7 human 10966 RAB40B RAB40B, member RAS oncogene... XM_017024042.1 77.6% 75% (many diffs)
8 human 10966 RAB40B RAB40B, member RAS oncogene... XM_017024043.1 77.6% 75% (many diffs)
9 human 10966 RAB40B RAB40B, member RAS oncogene... XM_024450550.1 77.6% 75% (many diffs)
10 human 10966 RAB40B RAB40B, member RAS oncogene... XM_024450551.1 77.6% 75% (many diffs)
11 mouse 217371 Rab40b Rab40B, member RAS oncogene... NM_139147.3 86.9% 92.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
900
ORF length:
834
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag cgccctgggc agcccggtcc gggcctacga ctttctgctc aagttcctgc
121tggtgggcga cagcgacgtg ggcaagggcg agatcctggc gagcctgcag gatggcgcgg
181ccgagtccac gtacggccac ccggcgggca tcgactacaa gacgaccacc atcctgctgg
241acgggcggcg ggtgaagctg cagctctggg atacttcagg ccagggaaga ttttgtacca
301tattccgctc ctactcccgg ggcgcacagg gtgtgatcct ggtctatgac attgcgaacc
361gctggtcttt tgacggcatt gatcgatgga ttaaggagat cgatgagcat gcccccggag
421tccccaagat cctggtgggg aaccgcctgc acctggcgtt caagcggcag gtgcccacgg
481agcaggccca ggcctacgcc gagcgcctgg gcgtgacctt ctttgaggtc agccctctgt
541gcaatttcaa catcacagag tcgttcacgg agctggccag gatcgtgctg ctgcggcatg
601ggatggaccg gctctggcgg ccgagcaagg tgctgagctt gcaagacctc tgctgccggg
661cggtcgtgtc ctgcacgccg gtgcacctgg tggacaagct cccgctcccc attgccttaa
721gaagccacct caagtccttc tcgatggcca acggcctgaa tgccaggatg atgcacggcg
781gttcctactc cctcaccacc agctccaccc acaaaaggag cagcctccgc aaagtgaagc
841tcgtccgccc cccccagagc ccccccaaaa actgcaccag aaacagctgc aaaatttctt
901acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
961attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1021ggatta

Download FASTA (ORF) (Full)