Construct: ORF ccsbBroad304_07837
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006231.1_s304c1, BRDN0000462394
- Derived from:
- ccsbBroadEn_07837
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SIPA1L3 (23094)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07837
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23094 | SIPA1L3 | signal induced proliferatio... | NM_015073.3 | 99.9% | 99.9% | (many diffs) |
| 2 | human | 23094 | SIPA1L3 | signal induced proliferatio... | XM_005258671.4 | 99.9% | 99.9% | (many diffs) |
| 3 | human | 23094 | SIPA1L3 | signal induced proliferatio... | XM_011526657.2 | 99.9% | 99.9% | (many diffs) |
| 4 | human | 23094 | SIPA1L3 | signal induced proliferatio... | XM_017026518.2 | 99.8% | 99.8% | (many diffs) |
| 5 | human | 23094 | SIPA1L3 | signal induced proliferatio... | XR_001753640.2 | 57% | (many diffs) | |
| 6 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | NM_001081028.1 | 86.1% | 91% | (many diffs) |
| 7 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_011250732.2 | 86.1% | 91% | (many diffs) |
| 8 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540405.2 | 86% | 91% | (many diffs) |
| 9 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540397.3 | 84% | 87.9% | (many diffs) |
| 10 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540399.3 | 84% | 87.9% | (many diffs) |
| 11 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540400.3 | 84% | 87.9% | (many diffs) |
| 12 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540401.3 | 84% | 87.9% | (many diffs) |
| 13 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540402.3 | 84% | 87.9% | (many diffs) |
| 14 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540403.2 | 84% | 87.9% | (many diffs) |
| 15 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_011250727.2 | 84% | 87.9% | (many diffs) |
| 16 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_011250728.2 | 84% | 87.9% | (many diffs) |
| 17 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_011250729.2 | 84% | 87.9% | (many diffs) |
| 18 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_011250730.2 | 84% | 87.9% | (many diffs) |
| 19 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_011250731.2 | 84% | 87.9% | (many diffs) |
| 20 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_017312346.1 | 84% | 87.9% | (many diffs) |
| 21 | mouse | 74206 | Sipa1l3 | signal-induced proliferatio... | XM_006540404.3 | 84% | 87.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 5412
- ORF length:
- 5343
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaccacctat cgggccatcc ccagcgatgg tgtggacctg gcagccagct 121 gtggcgccag ggtgggcgat gtcctccctg ggccacacac aggggactac gctcccttgg 181 gattctgggc ccagaatggc agcatgtccc agcctcttgg cgagagcccg gccaccgcca 241 ccgccaccgc caccgccacc acccgcccca gccccaccac tcccgcaatg cccaagatgg 301 gcgtgcgcgc aagggtggcc gactggccgc ccaagcggga ggccctgaga gagcacagca 361 acccaagccc ctcccaggac acagatggca caaaggccac caagatggcc cattccatga 421 ggagcataca gaacggacag ccccccacca gcaccccggc ttcctcaggg tccaaagcct 481 tccaccgact ctccaggaga aggtccaaag acgtggagtt ccaggacggg tggccccggt 541 cccccggcag ggccttcctc ccccttcggc accgcagcag cagcgagatc accctcagcg 601 agtgtgacgc ggaggacgcg ggggagccgc ggggggcccg gcacacgggg gcgctgcccc 661 tcttccgcga gtacgggagc acctcgtcca tcgacgtgca gggcatgccc gagcagagct 721 tcttcgacat cctgaacgag ttccgcagcg agcagcccga cgcccgaggg tgccaggccc 781 tcaccgagct cctccgggca gatcctggcc cacacctcat ggggggcggc ggcggagcca 841 agggggactc ccacaacggg cagcccgcca aggacagcct cctgccactg cagcccacga 901 aggagaagga gaaggcccgg aagaaacctg cgcggggcct cggcggcggg gacacggtgg 961 actcgtccat ctttcggaag ctaaggagca gcaaacccga gggggaggct gcgcgttccc 1021 cgggggaggc cgacgagggc cggagccccc cggaagccag caggccgtgg gtgtgtcaga 1081 agagcttcgc ccacttcgac gtgcagagca tgctgttcga cctcaacgag gcggccgcca 1141 acagggtgtc ggtgtcgcag cggcggaaca ccaccacggg tgcttcggcc gcttccgccg 1201 cctcggccat ggcctccctc acggcctcgc gggcccacag cctcggaggc ctggacccgg 1261 ccttcaccag cacagaggac ctaaactgca aggagaactt ggagcaggac ctcggcgatg 1321 acaacagcaa cgacctgctg ctcagctgcc cgcacttccg caatgagatc gggggcgagt 1381 gtgagcgcaa cgtgagcttc tcccgggctt ccgtgggctc cccgagcagc ggcgagggcc 1441 acctggcaga gcccgccctg agcgcctacc gcaccaacgc cagcatctcg gtgttggaag 1501 ttcccaagga gcagcagcgg acgcagagtc ggccccggca gtacagcatc gagcatgtgg 1561 acctgggcgc ccgctactac caggattact tcgtgggcaa agaacatgcc aattacttcg 1621 gcgtggatga gaagctgggg ccagtggctg tgagcattaa gcgggagaag ctggaagacc 1681 acaaggagca cggacctcag taccagtaca ggatcatctt ccggacccgc gagctcatca 1741 ccctgcgggg ctccatcctg gaagatgcta cgcccacagc caccaagcat gggaccgggc 1801 ggggcctgcc cttgaaggat gccctggagt atgtcatccc cgagctcaac atccactgcc 1861 tgcggctggc cctcaacacc cccaaggtga cggagcaact gctgaagctc gatgagcaag 1921 ggctctgccg gaagcacaag gtgggcatcc tctattgcaa ggccggccag agctccgagg 1981 aggagatgta caacaatgag gaggccggcc ccgcctttga ggagttcctc tccctcatcg 2041 gcgagaaggt ctgcctgaag ggcttcacca agtacgctgc ccagctggac gtcaagaccg 2101 actccacggg aacccactcc ctctacacga tgtaccagga ctacgagatc atgttccatg 2161 tctccaccct gctcccttac acccccaaca acaggcagca gctgctacgg aagaggcaca 2221 taggaaatga catcgtgacg atcatcttcc aggagcctgg cgcgctaccg ttcaccccca 2281 agaacatccg ctcccacttc cagcacgtct tcatcattgt ccgagtccac aacccctgca 2341 ctgataacgt ctgttacagt atggctgtga cccgatccaa agatgctcct cctttcggcc 2401 cccccatccc cagtggaacc acattccgca aatccgacgt cttcagagac ttcttgctgg 2461 ccaaggtgat taacgctgag aacgccgcgc acaagtccga caagttccac accatggcca 2521 ccaggacccg ccaggagtat ctcaaggacc tggccgaaaa ctgtgtctcc aacaccccca 2581 tcgactccac cggcaaattc aacctcatct ccctgacctc caagaagaag gaaaagacaa 2641 aagcacgggc tggcgctgag cagcacagtg caggggccat cgcctggagg gtggtggccc 2701 aggactacgc ccagggggtg gaaatcgact gcattttggg aatttccaat gagtttgtgg 2761 tgctcctgga cttacgcacc aaggaggtgg tgttcaactg ctactgcggg gatgtcattg 2821 gctggactcc agactcctcc acactcaaaa tcttctatgg acgaggagac cacatcttcc 2881 tacaggcgac agagggttct gtggaggaca taagggaaat agtgcagaga ctgaaggtga 2941 tgaccagtgg ctgggagacg gtggacatga cgcttcggcg gaacgggctc gggcagctgg 3001 gcttccacgt gaagtacgac ggcacggtgg ccgaggttga ggactatggg ttcgcctggc 3061 aggccggcct ccggcagggc agccgactag tggagatctg caaggtggcc gtggtcacac 3121 tgacccacga ccagatgatc gacctgctgc gcacctctgt cactgtgaag gtggtcatca 3181 tcccgccttt tgaggacggc actccccgga ggggttggcc ggagacctac gacatgaata 3241 cctcggagcc caagacggag caggaaagca tcactcctgg gggccggccc ccctaccgca 3301 gcaatgctcc ctggcagtgg agcgggcccg catcccataa ctctctacca gcctccaagt 3361 gggccactcc aaccactccc ggccatgccc agtccctgag ccggcccctg aagcagaccc 3421 ccatagtccc cttccgggag tcccagccac tgcacagcaa gaggcctgtc agcttcccag 3481 aaacccctta cacagtatca ccagcagggg ccgacagagt ccctccctac cgacagcctt 3541 ctgggagctt ctccaccccc ggttcggcca cctacgtgag atacaagcca tccccagaaa 3601 ggtacacggc tgccccacac cccctgctat ctcttgatcc ccacttcagc cacgatggga 3661 cgtccagcgg cgactcctct tccggcggcc tgaccagcca ggagagcacc atggaacgcc 3721 agaagccaga gcctttgtgg catgtgcctg cccaggccag gctctcagcc atagccggaa 3781 gcagcgggaa caagcacccg tccaggcagg atgcagcagg caaagattcc cccaacaggc 3841 attccaaagg agaacctcaa tactcaagtc attccagcag caacaccctc tccagcaacg 3901 catccagcag ccacagcgac gaccgctggt tcgaccccct ggaccccctg gagccagagc 3961 aagaccccct ctccaagggt ggctctagtg acagcggcat cgataccacc ctctacacct 4021 ccagccctag ctgcatgtcc ctggccaagg ctccacggcc cgccaagcca cacaagcccc 4081 ctggaagtat gggcctttgt ggcgggggtc gcgaggccgc tgggaggtcc caccacgcag 4141 acaggcggcg ggaggtctcc cctgcccccg cagttgccgg ccaaagcaag ggctaccgac 4201 cgaagctgta ctcctccggc tccagcaccc ccacgggact ggcggggggc agccgagacc 4261 caccgaggca gcccagtgac atgggctcga gggttggcta ccccgctcag gtttacaaaa 4321 ctgccagtgc agagactcct cggccctccc agctggccca gcccagcccc tttcagctct 4381 ccgcctccgt ccccaagtcc ttcttctcca agcagcctgt acgcaataag cacccaacag 4441 ggtggaagag aacggaggag cccccaccac ggccactccc cttcagtgac ccaaagaagc 4501 aggtggacac gaacaccaaa aatgtctttg ggcaaccgag gttgagggca tccctccgag 4561 acctccggtc accacggaag aactacaaat ccaccatcga ggatgacctg aagaaactca 4621 tcatcatgga caacctgggg ccagagcagg agagagacac gggacagtca ccgcagaagg 4681 gcctgcagcg gacgctgtcg gacgagagcc tgtgcagcgg gcgccgggag cccagcttcg 4741 ccagccccgc tggcctagag ccagggctgc ccagcgacgt gctcttcacc agcacctgcg 4801 ccttcccgtc cagcacgctg cctgcacgcc gccagcacca gcacccccac ccgcccgtcg 4861 gccccggtgc cacccctgcc gccggcagcg gctttcccga gaagaaatcc accatctcag 4921 cctcggagct ctcgctggct gatgggcggg accgccccct gcggcgcctg gaccctgggc 4981 tgatgcccct gcctgacaca gctgctggcc tcgagtggtc cagcctggtg aacgcagcca 5041 aggcatacga agtgcaaaga gccgtctcac tcttctctct gaacgacccg gccctgagcc 5101 cggacatccc gcctgcacac agtcctgtcc acagccacct gagcctggag aggggacccc 5161 cgacccccag gaccacccct accatgagcg aggagccacc cctggatctg acaggcaagg 5221 tgtaccagct ggaggtgatg ctgaaacagc tgcacactga cctgcagaag gagaagcagg 5281 acaaggtggt gctccagtca gaggtggcca gcctgcggca gaacaaccag cggctgcagg 5341 aggagtcgca ggccgccagc gagcagctgc gcaagtttgc ggagatcttc tgcagggaga 5401 agaaggagct cttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 5461 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 5521 caatcaacct ctggatta