Transcript: Human XM_005258671.4

PREDICTED: Homo sapiens signal induced proliferation associated 1 like 3 (SIPA1L3), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SIPA1L3 (23094)
Length:
8432
CDS:
958..6303

Additional Resources:

NCBI RefSeq record:
XM_005258671.4
NBCI Gene record:
SIPA1L3 (23094)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005258671.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182988 CCGATTTATTTGAGAGAGAAA pLKO.1 6975 3UTR 100% 4.950 6.930 N SIPA1L3 n/a
2 TRCN0000183492 GCCGATTTATTTGAGAGAGAA pLKO.1 6974 3UTR 100% 4.950 6.930 N SIPA1L3 n/a
3 TRCN0000147758 GAACCTCAATACTCAAGTCAT pLKO.1 4741 CDS 100% 4.950 3.960 N SIPA1L3 n/a
4 TRCN0000272315 CAAGCAGCCTGTACGCAATAA pLKO_005 5298 CDS 100% 13.200 9.240 N SIPA1L3 n/a
5 TRCN0000284736 CATCGACTCCACCGGCAAATT pLKO_005 3468 CDS 100% 13.200 9.240 N SIPA1L3 n/a
6 TRCN0000272369 TTGCTGGCCAAGGTGATTAAC pLKO_005 3343 CDS 100% 13.200 9.240 N SIPA1L3 n/a
7 TRCN0000284735 GTGGAACCACATTCCGCAAAT pLKO_005 3302 CDS 100% 10.800 7.560 N SIPA1L3 n/a
8 TRCN0000272371 TCTGCACCACGCACAACAAAG pLKO_005 6695 3UTR 100% 10.800 7.560 N SIPA1L3 n/a
9 TRCN0000149732 GCTGGTTCTCTAAAGGCAATA pLKO.1 7383 3UTR 100% 10.800 6.480 N SIPA1L3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005258671.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07837 pDONR223 100% 99.9% 99.9% None (many diffs) n/a
2 ccsbBroad304_07837 pLX_304 0% 99.9% 99.9% V5 (many diffs) n/a
3 TRCN0000480568 ACATAGCAAAACTGGCTAAGTTGC pLX_317 6.4% 99.9% 99.9% V5 (many diffs) n/a
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