Construct: ORF ccsbBroad304_07871

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010844.1_s304c1, BRDN0000403771
Derived from:
ccsbBroadEn_07871
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LARP1 (23367)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07871
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_015315.5 99.9% 100% 1521T>C
2 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367717.1 97.4% 97.3% 760_761ins78;1443T>C
3 human 23367 LARP1 La ribonucleoprotein 1, tra... XM_011537616.1 95.5% 93.1% (many diffs)
4 human 23367 LARP1 La ribonucleoprotein 1, tra... XM_011537617.1 94% 93.1% (many diffs)
5 human 23367 LARP1 La ribonucleoprotein 1, tra... XM_006714775.2 93.5% 93.4% (many diffs)
6 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_033551.3 90.9% 88.4% (many diffs)
7 human 23367 LARP1 La ribonucleoprotein 1, tra... XM_011537614.1 88.5% 86% (many diffs)
8 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367718.1 87.9% 85.4% (many diffs)
9 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367713.1 87.4% 87.4% 0_1ins384;1137T>C
10 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367714.1 87.4% 87.4% 0_1ins384;1137T>C
11 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367719.1 87.4% 87.4% 0_1ins384;1137T>C
12 human 23367 LARP1 La ribonucleoprotein 1, tra... XM_005268408.3 87.4% 87.4% 0_1ins384;1137T>C
13 human 23367 LARP1 La ribonucleoprotein 1, tra... XM_011537615.1 84.8% 82.3% (many diffs)
14 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367716.1 84.1% 84.2% 0_1ins384;354_355ins99;1038T>C
15 human 23367 LARP1 La ribonucleoprotein 1, tra... NM_001367715.1 80.8% 80.7% 0_1ins384;253_254ins201;936T>C
16 mouse 73158 Larp1 La ribonucleoprotein domain... NM_028451.1 83% 86.3% (many diffs)
17 mouse 73158 Larp1 La ribonucleoprotein domain... XM_006534334.2 81.7% 82.4% (many diffs)
18 mouse 73158 Larp1 La ribonucleoprotein domain... XM_011249280.2 78.6% 83.1% (many diffs)
19 mouse 73158 Larp1 La ribonucleoprotein domain... XM_017314797.1 78.6% 83.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3123
ORF length:
3057
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct ttggagggtg cttttgtcaa agaggcctcc tttccctcac ccagagctgg
121atttccaaga ggctcccata cctagctgcc ctggcagact cccagggagg aaaaacagcg
181tggccttggc agctgccccg aggaaggagc ccacaggtga cagggagaag ccattgccat
241tccctgtcct ggcccccttc agcaaccctg aacactctgc tccagccaag gtggtgaggg
301cagctgttcc taaacagcgc aaaggcagca aggttggtga ctttggagat gcaatcaatt
361ggcccacacc tggagagata gcccacaaga gtgttcagcc acagtcccac aagcctcagc
421ctacccgtaa actgccaccc aagaaggaca tgaaggaaca ggagaaagga gaagggagtg
481atagtaagga gagtccaaaa accaaatcag atgaatcagg ggaggaaaag aatggagatg
541aggattgcca gcgaggcggg cagaagaaga aaggaaacaa acacaagtgg gttccattac
601aaatagacat gaagcctgaa gtgcccagag agaaactggc ttcacgcccc actcgcccac
661cggagcctag acacatacct gccaatcgcg gagagatcaa agggtctgag tctgccacct
721acgtgcccgt ggcccccccc accccagcct ggcaaccaga gatcaaaccg gagcctgcct
781ggcacgacca ggatgagaca tcgagtgtga agagtgatgg ggctggtggg gcgcgggctt
841ccttccgtgg ccgtggacgg gggcgtggtc gcggccgggg acgcggccgg ggtggcactc
901gaacccattt tgactaccag tttggctacc gaaagtttga tggtgtggag gggcctcgta
961cgcccaagta catgaacaac atcacctact actttgacaa tgtcagcagc accgagcttt
1021acagtgtgga tcaggaactg ctcaaagact acatcaagcg ccagattgaa tactacttca
1081gcgtggacaa tttagagcga gacttcttcc tgcgaaggaa aatggatgct gatggtttcc
1141tacccatcac ccttattgct tccttccacc gagtgcaggc ccttaccact gacatttcac
1201tcatctttgc ggccctaaag gacagcaagg tggtggagat cgttgatgag aaagttcgta
1261ggagggagga accagaaaag tggcctcttc ccccaatagt ggattattca cagactgatt
1321tctcccagct tctcaactgc cctgaatttg ttccccgtca gcactaccaa aaggagacag
1381agtcggcacc tggctctcct cgtgcagtca ccccagtgcc aaccaaaaca gaggaggtca
1441gcaacctaaa gacactaccc aagggcctgt ctgccagcct gcctgacctg gattctgaga
1501actggattga agtgaagaag aggcctcggc catccccagc acggcccaag aagtcagagg
1561agtccagatt ttcccacctg acctccctgc ctcagcagct gccttcccag cagctgatgt
1621ccaaggatca ggatgagcaa gaggaactgg attttctgtt tgacgaggag atggagcaga
1681tggatgggcg gaagaacacc ttcactgcct ggtctgatga ggaatctgac tatgagattg
1741atgacaggga tgtcaacaag atcctcattg tcacccagac accacattac atgcgccggc
1801acccaggggg ggaccgcaca ggcaaccaca cctcgcgtgc caagatgagc gccgaactgg
1861ccaaggtcat taatgatggc ctcttctact atgagcagga cctgtgggct gaaaagtttg
1921aacctgagta ttcccagatc aagcaagaag tcgagaactt caaaaaggtc aatatgatca
1981gccgggagca gtttgacaca ctgacccctg agccccctgt ggatcccaac caggaagttc
2041ctcctgggcc acctcggttc cagcaagttc ctacggatgc cctggccaac aagttgtttg
2101gtgctcctga gccctccacc atcgcccgct ctctaccaac cactgtccca gagtcaccaa
2161actaccgcaa caccaggacc cctcgcactc cccggacacc acagctcaaa gactcaagcc
2221agacatcacg gttttaccca gtggtgaaag aaggacggac actggatgcc aagatgcctc
2281gaaaaagaaa gacaagacac agttcaaacc cacccttgga gagccatgtg ggctgggtga
2341tggattcccg tgagcacagg ccccgtactg cttccatcag ctccagcccc tcagaaggga
2401cgcctacagt tggcagctat ggctgtaccc ctcagtcatt gcccaagttc cagcatcctt
2461cccatgaact gctcaaggaa aatggcttca cacaacacgt ctaccataag tatcgtaggc
2521gctgccttaa tgagcggaaa cgcttgggca ttggccagtc tcaggagatg aacacactct
2581tccgcttctg gtccttcttc ctccgagatc acttcaacaa aaagatgtat gaggagttca
2641agcagctggc tctggaggac gccaaagaag gctacagata tggtttggag tgcctttttc
2701gatactacag ttatggcctg gaaaagaagt tccggctgga catattcaag gattttcagg
2761aggaaacggt gaaggactat gaagctggcc aactgtatgg gctggagaag ttctgggcct
2821tcttgaaata ttccaaagcc aaaaatttgg acattgaccc caaactgcaa gaatacctcg
2881gcaaattccg acgtcttgaa gacttccgag tagatccccc catgggtgag gagggcaacc
2941acaagcgaca ctcagtggta gcaggaggtg gcggcggtga gggcaggaag cggtgcccct
3001cccagtcttc cagcaggcct gctgccatga tcagccaacc ccctacacca cccaccggcc
3061agcctgtccg ggaagatgcc aaatggacaa gccagcactc gaacacacag actttgggaa
3121agtgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
3181tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
3241tctggatta

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