Construct: ORF ccsbBroad304_07872

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007193.1_s304c1, BRDN0000410274
Derived from:
ccsbBroadEn_07872
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CRTC1 (23373)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07872
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23373 CRTC1 CREB regulated transcriptio... NM_015321.3 99.9% 99.8% 982A>G
2 human 23373 CRTC1 CREB regulated transcriptio... NM_001098482.2 97.4% 97.3% 243_290del;1030A>G
3 human 23373 CRTC1 CREB regulated transcriptio... XM_005259834.1 95.3% 95.2% 982A>G;1425_1426ins87
4 human 23373 CRTC1 CREB regulated transcriptio... XM_005259833.3 93% 92.9% 243_290del;1030A>G;1473_1474ins87
5 human 23373 CRTC1 CREB regulated transcriptio... XM_011527842.3 92.1% 92% 243_290del;1030A>G;1368_1369ins105
6 human 23373 CRTC1 CREB regulated transcriptio... XM_017026536.1 87% 86.9% (many diffs)
7 human 23373 CRTC1 CREB regulated transcriptio... XM_005259835.3 84.2% 84.1% 243_290del;1030A>G;1056_1057ins258
8 human 23373 CRTC1 CREB regulated transcriptio... XM_005259836.3 78.8% 78.7% (many diffs)
9 human 23373 CRTC1 CREB regulated transcriptio... XM_024451434.1 78.1% 78% 982A>G;1011_1012ins414
10 human 23373 CRTC1 CREB regulated transcriptio... XM_006722710.3 76.2% 76.1% 243_290del;1030A>G;1059_1060ins414
11 human 23373 CRTC1 CREB regulated transcriptio... XM_017026537.1 74.4% 73.2% (many diffs)
12 human 23373 CRTC1 CREB regulated transcriptio... XM_017026538.2 42.2% 34.7% (many diffs)
13 mouse 382056 Crtc1 CREB regulated transcriptio... NM_001004062.2 85% 89.6% (many diffs)
14 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242311.2 81.5% 85.9% (many diffs)
15 mouse 382056 Crtc1 CREB regulated transcriptio... XM_006509699.3 80.8% 85.4% (many diffs)
16 mouse 382056 Crtc1 CREB regulated transcriptio... XM_006509700.3 79.6% 84.1% (many diffs)
17 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242309.2 77.5% 81.9% (many diffs)
18 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242310.2 76.4% 80.7% (many diffs)
19 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242312.2 60.9% 60.9% (many diffs)
20 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242313.2 60.1% 62.8% (many diffs)
21 mouse 382056 Crtc1 CREB regulated transcriptio... XM_006509704.2 59% 61.8% (many diffs)
22 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242314.2 40.9% 40.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1968
ORF length:
1902
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gacttcgaac aatccgcgga aattcagcga gaagatcgcg ctgcacaatc
121agaagcaggc ggaggagacg gcggccttcg aggaggtcat gaaggacctg agcctgacgc
181gggccgcgcg gctccagctc cagaaatccc agtacctgca actgggcccc agccgaggcc
241agtactatgg cgggtccctg cccaacgtga accagatcgg gagtggcacc atggacctgc
301ccttccagac ccccttccaa tcctcgggcc tggacaccag ccggaccacc cggcaccatg
361ggctggtgga cagggtgtac cgggagcgtg gccggctcgg ctccccacac cgccggcccc
421tgtcagtgga caaacacgga cggcaggccg acagctgccc ctatggcacc atgtacctct
481caccacccgc ggacaccagc tggagaagga ccaattctga ctccgccctg caccagagca
541caatgacgcc cacgcagcca gaatccttta gcagtgggtc ccaggacgtg caccagaaaa
601gagtcttact gttaacagtc ccaggaatgg aagagaccac atcagaggca gacaaaaacc
661tttccaagca agcatgggac accaagaaga cggggtccag gcccaagtcc tgtgaggtcc
721ccggaatcaa catcttcccg tctgccgacc aggaaaacac tacagccctg atccccgcca
781cccacaacac aggggggtcc ctgcccgacc tgaccaacat ccacttcccc tccccgctcc
841cgaccccgct ggaccccgag gagcccacct tccctgcact gagcagctcc agcagcaccg
901gcaacctcgc ggccaacctg acgcacctgg gcatcggtgg cgccggccag ggaatgagca
961cacctggctc ctctccacag caccgcccag ctggcgtcag ccccctgtcc ctgagcacag
1021aggcaaggcg tcagcaggca tcgcccgccc tgtccccgct gtcacccatc actcaggctg
1081tagccatgga cgccctgtct ctggagcagc agctgcccta cgccttcttc acccaggcgg
1141gctcccagca gccaccgccg cagccccagc ccccgccgcc tcctccaccc gcgtcccagc
1201agccaccacc cccgccaccc ccacaggcgc ccgtccgcct gccccctggt ggccccctgt
1261tgcccagcgc cagcctgact cgtgggccac agccgccccc gcttgcagtc acggtaccgt
1321cctctctccc ccagtccccc ccagagaacc ctggccagcc atcgatgggg atcgacatcg
1381cctcggcgcc ggctctgcag cagtaccgca ctagcgccgg ctccccggcc aaccagtctc
1441ccacctcgcc agtctccaat caaggcttct ccccagggag ctccccgcaa cacacttcca
1501ccctgggcag cgtgtttggg gacgcgtact atgagcagca gatggcggcc aggcaggcca
1561atgctctgtc ccaccagctg gagcagttca acatgatgga gaacgccatc agctccagca
1621gcctgtacag cccgggctcc acactcaact actcgcaggc ggccatgatg ggcctcacgg
1681gcagccacgg gagcctgccg gactcgcagc aactgggata cgccagccac agtggcatcc
1741ccaacatcat cctcacagtg acaggagagt ccccccccag cctctctaaa gaactgacca
1801gctctctggc cggggtcggc gacgtcagct tcgactccga cagccagttt cccctggacg
1861aactcaagat cgaccccctg accctcgacg gactgcacat gctcaacgac cccgacatgg
1921ttctggccga cccagccacc gaggacacct tccggatgga ccgcctgtgc ccaactttct
1981tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
2041aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)