Construct: ORF ccsbBroad304_08060

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017418.1_s304c1, BRDN0000406814
Derived from:
ccsbBroadEn_08060
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPNE7 (27132)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08060
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27132 CPNE7 copine 7 NM_153636.3 99.9% 100% 1638T>C
2 human 27132 CPNE7 copine 7 XM_011523000.1 93.7% 88.9% 1538_1631del;1732T>C;1769_1785del
3 human 27132 CPNE7 copine 7 XM_017023140.2 93% 88.3% (many diffs)
4 human 27132 CPNE7 copine 7 NM_014427.5 88% 88.1% 353_577del;1863T>C
5 human 27132 CPNE7 copine 7 XM_017023139.2 87.5% 87.5% 170_181del;365_589del;1875T>C
6 human 27132 CPNE7 copine 7 XM_017023138.2 83.2% 79% (many diffs)
7 human 27132 CPNE7 copine 7 XM_011523001.3 74% 66.7% (many diffs)
8 human 27132 CPNE7 copine 7 XM_017023141.1 51.5% 46.9% (many diffs)
9 mouse 102278 Cpne7 copine VII NM_170684.2 85.1% 89.6% (many diffs)
10 mouse 102278 Cpne7 copine VII XM_006530549.2 66.2% 70.3% (many diffs)
11 mouse 102278 Cpne7 copine VII XR_001778387.1 65.1% (many diffs)
12 mouse 102278 Cpne7 copine VII XR_387726.3 57.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1740
ORF length:
1674
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag cgcgggctcg gagcgcgggg cggcggcaac ccccgggggt ttgcccgcgc
121cctgcgcctc gaaggtggag ctgcggctca gctgccggca cctgctggac cgcgacccgc
181tcaccaagtc cgaccccagc gtggcgttgc tgcagcaggc gcagggccag tgggtgcagg
241tgggcagaac cgaggtggtc cggagcagcc tgcatcccgt gttctccaag gtcttcacgg
301tggactacta cttcgaggag gtgcagaggc tgcgctttga ggtgtacgac acgcatgggc
361ccagcggctt cagctgtcag gaggacgatt tcctgggggg catggagtgc accctggggc
421agattgtggc ccagaagaag gtgacccgcc cgctgctgct caagtttggc aggaacgctg
481gcaagtccac catcacggtg atcgccgagg acatctcggg gaacaacggc tacgtggagc
541tctccttccg ggccaggaag ctggacgaca aggacctctt cagcaagtcc gaccccttcc
601tggagctcta cagggtcaac gacgaccagg gcttgcagct ggtgtacagg acggaggtgg
661tgaagaacaa cctgaacccg gtgtgggagg ccttcaaagt ctctctgagt tccctctgca
721gctgcgagga gacaaggcct ctaaagtgcc tggtctggga ttacgactct cgaggaaagc
781acgacttcat cggagaattc tctaccacct tcgaggagat gcagaaggcc tttgaggagg
841ggcaggccca gtgggactgt gtgaacccca aatacaagca gaagagacgc agttataaga
901actcaggagt ggtcgtcctg gctgacctca agttccacag ggtgtactcc ttcctggact
961atatcatggg cggctgccag atccacttca ccgtggccat tgacttcacc gcctccaatg
1021gagacccgcg gaacagctgc tccctgcact acatcaaccc ctaccagccg aacgagtacc
1081tgaaggcact ggtgtccgtg ggcgagatct gccaggacta tgacagtgac aagaggtttt
1141ccgctttggg gtttggagcc cggatccctc ccaagtatga ggtgtcccat gactttgcca
1201tcaatttcaa ccctgaggac gatgagtgtg aaggcatcca gggcgtggtg gaggcctacc
1261agaactgcct gcccagggtc cagctctacg gccccaccaa cgtggcgccc atcatctcca
1321aggtggcacg cgtggcggcg gccgaggaga gcaccgggaa agcctctcaa tactacatcc
1381tgctgatcct gacggacggc gtggtgaccg acatggccga cacacgggag gccattgtgc
1441gtgcctcacg cctgcccatg tccatcatca tcgtgggcgt gggcaacgcc gacttcaccg
1501acatgcaggt cctggacggc gacgacggcg tcctgcgctc cccacggggt gagcccgcgc
1561tccgggacat cgtacagttc gtgcccttcc gggagctcaa gaacgcatcc cctgcggcgc
1621tggccaagtg cgtgctggcc gaggtcccga agcaggtggt ggagtactac agccacagag
1681gcctgccccc gagaagcctg ggcgtccctg ccggagaggc cagcccaggc tgcacaccgt
1741gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1801attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1861ggatta

Download FASTA (ORF) (Full)

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