Transcript: Human XM_011523001.3

PREDICTED: Homo sapiens copine 7 (CPNE7), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CPNE7 (27132)
Length:
2282
CDS:
91..1674

Additional Resources:

NCBI RefSeq record:
XM_011523001.3
NBCI Gene record:
CPNE7 (27132)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011523001.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000160940 GCAGAAGAGACGCAGTTATAA pLKO.1 699 CDS 100% 15.000 21.000 N CPNE7 n/a
2 TRCN0000437143 CACCGGGAAAGCCTCTCAATA pLKO_005 1173 CDS 100% 13.200 18.480 N CPNE7 n/a
3 TRCN0000429767 TCGAGGAAAGCACGACTTCAT pLKO_005 591 CDS 100% 4.950 6.930 N CPNE7 n/a
4 TRCN0000162455 CCCAAATACAAGCAGAAGAGA pLKO.1 688 CDS 100% 3.000 2.400 N CPNE7 n/a
5 TRCN0000160324 CCATGACTTTGCCATCAATTT pLKO.1 1008 CDS 100% 13.200 9.240 N CPNE7 n/a
6 TRCN0000437439 AGCTGTCAGGAGGACGATTTC pLKO_005 108 CDS 100% 10.800 7.560 N CPNE7 n/a
7 TRCN0000164465 CTTCACGGTGGACTACTACTT pLKO.1 29 5UTR 100% 4.950 3.465 N CPNE7 n/a
8 TRCN0000163755 GCCTTCAAAGTCTCTCTGAGT pLKO.1 511 CDS 100% 2.640 1.848 N CPNE7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011523001.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08060 pDONR223 100% 74% 66.7% None (many diffs) n/a
2 ccsbBroad304_08060 pLX_304 0% 74% 66.7% V5 (many diffs) n/a
3 TRCN0000480793 AGGTGCGAATACAACTGGACTCTG pLX_317 21.4% 74% 66.7% V5 (many diffs) n/a
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