Construct: ORF ccsbBroad304_08131

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001708.1_s304c1, BRDN0000407099
Derived from:
ccsbBroadEn_08131
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX10 (29887)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08131
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29887 SNX10 sorting nexin 10 NM_001199835.1 99.6% 99.5% 9G>A;340G>N
2 human 29887 SNX10 sorting nexin 10 NM_001318199.2 99.6% 99.5% 9G>A;340G>N
3 human 29887 SNX10 sorting nexin 10 NM_013322.2 99.6% 99.5% 9G>A;340G>N
4 human 29887 SNX10 sorting nexin 10 XM_006715712.2 99.6% 99.5% 9G>A;340G>N
5 human 29887 SNX10 sorting nexin 10 NM_001199837.2 97.6% 97% (many diffs)
6 human 29887 SNX10 sorting nexin 10 NM_001318198.1 87.6% 85.4% (many diffs)
7 human 29887 SNX10 sorting nexin 10 NM_001362753.1 87.6% 85.4% (many diffs)
8 human 29887 SNX10 sorting nexin 10 NM_001362754.1 87.6% 85.4% (many diffs)
9 human 29887 SNX10 sorting nexin 10 XM_017012086.1 87.6% 85.4% (many diffs)
10 human 29887 SNX10 sorting nexin 10 NM_001199838.1 58% 57.7% 0_1ins252;88G>N
11 mouse 71982 Snx10 sorting nexin 10 NM_001127348.1 88.4% 95% (many diffs)
12 mouse 71982 Snx10 sorting nexin 10 NM_001127349.1 88.4% 95% (many diffs)
13 mouse 71982 Snx10 sorting nexin 10 NM_028035.4 88.4% 95% (many diffs)
14 mouse 71982 Snx10 sorting nexin 10 XM_006506653.3 88.4% 95% (many diffs)
15 mouse 71982 Snx10 sorting nexin 10 XM_017321753.1 88.4% 95% (many diffs)
16 mouse 71982 Snx10 sorting nexin 10 XM_011241474.1 71.3% 75.1% (many diffs)
17 mouse 71982 Snx10 sorting nexin 10 XM_011241475.1 71.3% 75.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
669
ORF length:
603
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt tccagaacaa cagaaagagg aatttgtaag tgtctgggtt cgagatccta
121ggattcagaa ggaggacttc tggcattctt acattgacta tgagatatgt attcatacta
181atagcatgtg ttttacaatg aaaacatcct gtgtacgaag aagatataga gaattcgtgt
241ggctgaggca gagactccaa agtaatgcgt tgctggtaca actgccagaa cttccatcta
301aaaacctgtt tttcaacatg aacaatcgcc agcacgtgga tcagcgtcgc cagggtctgg
361aagatttcct cagaaaagtc ctacagaatg cacttttgct ttcanatagc agccttcacc
421tcttcttaca gagccatctg aattcagaag acattgaggc gtgtgtttct gggcagacta
481agtactctgt ggaagaagca attcacaagt ttgccttaat gaatagacgt ttccctgaag
541aagatgaaga aggaaaaaaa gaaaatgata tagattatga ttcagaaagt tcatcctctg
601ggcttggaca cagtagtgat gacagcagtt cacatggatg taaagtaaat acagctccgc
661aggaatcctg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
721tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
781tcaacctctg gatta

Download FASTA (ORF) (Full)