Construct: ORF ccsbBroad304_08193

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013010.1_s304c1, BRDN0000400003
Derived from:
ccsbBroadEn_08193
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC35B3 (51000)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08193
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51000 SLC35B3 solute carrier family 35 me... NM_001142540.1 99.9% 100% 1098T>C
2 human 51000 SLC35B3 solute carrier family 35 me... NM_001142541.2 99.9% 100% 1098T>C
3 human 51000 SLC35B3 solute carrier family 35 me... NM_001370476.2 99.9% 100% 1098T>C
4 human 51000 SLC35B3 solute carrier family 35 me... NM_015948.4 99.9% 100% 1098T>C
5 human 51000 SLC35B3 solute carrier family 35 me... XM_017010910.1 99.9% 100% 1098T>C
6 human 51000 SLC35B3 solute carrier family 35 me... XM_017010911.1 99.9% 100% 1098T>C
7 human 51000 SLC35B3 solute carrier family 35 me... XM_017010912.2 92.1% 92.2% 779_780ins93;1005T>C
8 human 51000 SLC35B3 solute carrier family 35 me... XM_017010913.1 92.1% 92.2% 779_780ins93;1005T>C
9 human 51000 SLC35B3 solute carrier family 35 me... NM_001370478.2 91.9% 92% 0_1ins96;1002T>C
10 human 51000 SLC35B3 solute carrier family 35 me... NM_001370479.1 91.9% 92% 0_1ins96;1002T>C
11 human 51000 SLC35B3 solute carrier family 35 me... XM_011514648.1 91.9% 92% 0_1ins96;1002T>C
12 human 51000 SLC35B3 solute carrier family 35 me... XM_017010914.1 91.9% 92% 0_1ins96;1002T>C
13 human 51000 SLC35B3 solute carrier family 35 me... XM_006715103.3 91.7% 91.5% (many diffs)
14 human 51000 SLC35B3 solute carrier family 35 me... NM_001370477.1 84.2% 84.2% 0_1ins96;683_684ins93;909T>C
15 human 51000 SLC35B3 solute carrier family 35 me... XM_011514650.2 61% 57% (many diffs)
16 human 51000 SLC35B3 solute carrier family 35 me... XR_001743449.1 59.1% (many diffs)
17 human 51000 SLC35B3 solute carrier family 35 me... NR_163441.1 57.2% (many diffs)
18 human 51000 SLC35B3 solute carrier family 35 me... NR_163442.1 56.4% (many diffs)
19 human 51000 SLC35B3 solute carrier family 35 me... XR_001743446.1 56% (many diffs)
20 human 51000 SLC35B3 solute carrier family 35 me... NR_109913.1 54.3% (many diffs)
21 human 51000 SLC35B3 solute carrier family 35 me... XR_001743451.1 53.4% (many diffs)
22 human 51000 SLC35B3 solute carrier family 35 me... XR_001743448.1 50.4% (many diffs)
23 human 51000 SLC35B3 solute carrier family 35 me... NR_109914.1 45.2% (many diffs)
24 human 51000 SLC35B3 solute carrier family 35 me... XR_002956285.1 43.5% (many diffs)
25 mouse 108652 Slc35b3 solute carrier family 35, m... NM_001170431.1 82.1% 83% (many diffs)
26 mouse 108652 Slc35b3 solute carrier family 35, m... NM_001170430.1 79.5% 83.5% (many diffs)
27 mouse 108652 Slc35b3 solute carrier family 35, m... NM_134060.4 79.5% 83.5% (many diffs)
28 mouse 108652 Slc35b3 solute carrier family 35, m... XM_017315356.1 79.5% 83.5% (many diffs)
29 mouse 108652 Slc35b3 solute carrier family 35, m... XM_006516527.2 76.4% 77.3% (many diffs)
30 mouse 108652 Slc35b3 solute carrier family 35, m... XM_006516528.2 73.8% 77.5% (many diffs)
31 mouse 108652 Slc35b3 solute carrier family 35, m... XM_006516529.2 73.8% 77.5% (many diffs)
32 mouse 108652 Slc35b3 solute carrier family 35, m... XM_006516530.2 73.8% 77.5% (many diffs)
33 mouse 108652 Slc35b3 solute carrier family 35, m... XM_006516531.2 55.1% 58.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1269
ORF length:
1203
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cttgacacag caagcaaaag acatacagaa cataacagtc caggaaacca
121acaaaaataa ctctgaaagc attgaatgca gcaaaataac aatggatctc aagttcaaca
181attccaggaa atatatttct atcactgtgc catccaaaac ccaaacaatg tcaccacaca
241tcaagtcagt tgacgacgtt gtggtacttg gcatgaatct cagcaagttt aacaaactta
301ctcagttttt catatgtgtt gctggagttt ttgtatttta cctaatttat gggtatttac
361aggaattaat attttcagtg gagggtttta agtcctgtgg ctggtacctt accttagtgc
421agtttgcctt ttactccata tttggcctaa tagaacttca gcttattcag gacaaaagga
481ggagaatacc aggaaaaacc tacatgataa tagcttttct aactgtgggt actatggggt
541tatcaaacac ttccttgggc tacctgaatt accctaccca agtcatcttc aagtgctgca
601aattgattcc tgttatgcta ggaggagttt ttattcaagg aaagcgttat aatgttgcag
661atgtgtctgc tgccatatgt atgagccttg gcctgatatg gtttaccctc gctgacagca
721caactgcacc aaatttcaac ctgacgggtg tggtgcttat ttccctggca ctatgtgcag
781atgccgtcat tggaaatgtt caagagaaag ctatgaaact tcataatgct tctaattctg
841aaatggtatt gtattcgtat tcaattggtt ttgtatacat tttactggga ttgacatgca
901ctagtggatt aggccctgca gtaacatttt gtgcaaagaa tccagttcgg acctatggtt
961atgcgttcct tttttccctc actggatatt ttggaatctc ctttgttctg gctttgatta
1021aaatttttgg tgcacttatt gctgtaacag tgacaacagg aagaaaagca atgaccattg
1081tactttcgtt tatattcttt gctaaaccat tcacgtttca gtatgtatgg tctggtttgt
1141tagttgtcct tggtatattt ctcaatgttt acagcaaaaa tatggataaa ataagactac
1201catcactgta tgatttgata aacaaatcag tggaagcaag aaagtcaagg acgctggcac
1261agactgtata cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
1321tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
1381tcaacctctg gatta

Download FASTA (ORF) (Full)