Construct: ORF ccsbBroad304_08578
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002109.1_s304c1, BRDN0000407218
- Derived from:
- ccsbBroadEn_08578
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OGDHL (55753)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08578
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347819.1 | 99.8% | 99.8% | (many diffs) |
| 2 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_018245.3 | 99.8% | 99.8% | (many diffs) |
| 3 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | XM_011539946.2 | 99.8% | 99.8% | (many diffs) |
| 4 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001143996.1 | 94.1% | 94.1% | (many diffs) |
| 5 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347820.1 | 94.1% | 94.1% | (many diffs) |
| 6 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347823.1 | 93.9% | 93.8% | (many diffs) |
| 7 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347824.2 | 93.9% | 93.8% | (many diffs) |
| 8 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NR_144683.2 | 79.6% | (many diffs) | |
| 9 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001143997.1 | 79.2% | 79.1% | (many diffs) |
| 10 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347821.2 | 79.2% | 79.1% | (many diffs) |
| 11 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347822.1 | 79.2% | 79.1% | (many diffs) |
| 12 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NR_144686.2 | 77.1% | (many diffs) | |
| 13 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NR_144682.2 | 75% | (many diffs) | |
| 14 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347825.2 | 73.3% | 73.1% | (many diffs) |
| 15 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NR_144685.2 | 72.9% | (many diffs) | |
| 16 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NR_144684.2 | 72.5% | (many diffs) | |
| 17 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | XM_017016402.1 | 66.3% | 66.2% | (many diffs) |
| 18 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | XM_017016403.1 | 66.3% | 66.2% | (many diffs) |
| 19 | human | 55753 | OGDHL | oxoglutarate dehydrogenase ... | NM_001347826.1 | 60.4% | 60.2% | (many diffs) |
| 20 | mouse | 239017 | Ogdhl | oxoglutarate dehydrogenase-... | XM_006518951.2 | 87.5% | 92.9% | (many diffs) |
| 21 | mouse | 239017 | Ogdhl | oxoglutarate dehydrogenase-... | NM_001081130.1 | 85.9% | 91.2% | (many diffs) |
| 22 | mouse | 239017 | Ogdhl | oxoglutarate dehydrogenase-... | XR_001781119.1 | 48.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3096
- ORF length:
- 3030
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgag tcagctgagg ctgctgccgt cccgtcttgg ggtgcaggct gcgaggctcc 121 tggctgcaca tgacgtcccg gtgtttggct ggcgcagcag gtcctccggg ccaccggcca 181 ccttcccaag cagcaaaggt ggaggcggct ccagttacat ggaggagatg tacttcgcct 241 ggttggaaaa cccccagagt gtccacaagt cctgggacag cttcttcagg gaagccagcg 301 aggaagcctt ttctggctct gctcagccac ggcccccttc tgttgtccat gagagcaggt 361 ctgcagtctc aagtcggacc aagaccagca aattggtgga ggaccacctg gctgtgcagt 421 ccctgatccg ggcctaccag atccggggtc accatgtggc ccagctggac cccctgggca 481 ttctggatgc agacctggac tcctttgtgc cctcagactt gatcacaacc attgataaac 541 tggccttcta tgaccttcag gaggctgacc ttgataagga gttccagctg ccgacaacca 601 ccttcattgg gggctctgaa aacacccttt ctctgcggga gatcattcgg cgcctggaga 661 acacctactg ccagcacatt ggcctggagt tcatgttcat caacgatgtg gagcagtgcc 721 agtggatccg gcagaagttt gagacccctg gtgtgatgca gttctccagc gaggagaagc 781 ggaccctgct ggcccggcta gtgcgctcca tgaggtttga agacttcctg gcccggaaat 841 ggtcctcaga gaagcggttt ggcctggagg gctgtgaagt gatgattcct gccctcaaga 901 ccatcatcga caaatccagc gagatgggga ttgagaatgt catcttgggg atgccacaca 961 ggggaaggct gaacgtgctg gccaacgtga tccgcaagga cctggagcag atcttctgcc 1021 agtttgaccc caagctggag gcggcggacg agggctccgg ggatgtcaag taccacctgg 1081 gcatgtacca tgagaggatc aaccgcgtca ccaaccggaa catcactctg tcgctggttg 1141 ccaacccctc ccacctggag gcagtggacc ctgtggtgca ggggaagaca aaggcagagc 1201 agttctaccg tggagatgcc cagggcaaga aggtcatgtc catcctggtt catggggacg 1261 ccgcctttgc tggccagggc gtggtatatg agaccttcca cctgagcgac ctgccctcct 1321 acacgaccaa tggtaccgtg cacgtcgtcg tcaacaacca gattggattc accacagacc 1381 cccgaatggc ccgctcctca ccatacccga ccgacgtggc ccgggtggtc aatgcgccta 1441 tcttccatgt gaatgcagat gacccagagg ctgtgatata tgtgtgcagt gtggcagccg 1501 aatggagaaa cactttcaac aaagatgttg tcgtggacct ggtctgttac cgccggcgtg 1561 gccacaatga gatggacgag cccatgttca cccagctgct catgtacaag cagatccaca 1621 gacaggtgcc tgtgctgaag aagtacgcag acaagctgat tgccgagggc acagtcaccc 1681 tgcaggagtt tgaggaagaa attgccaaat acgaccggat ctgtgaggag gcttatggca 1741 ggtccaagga taaaaagatt ctgcatataa agcactggtt gaactccccc tggcctggct 1801 tcttcaacgt agatggggag cccaagagca tgacatgccc agccacgggg atccctgagg 1861 acatgctcac ccacatcggc agtgtggcca gctctgtgcc cctggaggac tttaagatcc 1921 acactggcct ctctcgcatt ctgcggggcc gtgcggacat gaccaagaac cggacggtgg 1981 actgggcgtt ggcagagtac atggcctttg gctccctgct gaaggaaggc atccacgtgc 2041 ggctcagcgg gcaggatgtg gagaggggca cattcagtca ccggcaccat gttctccatg 2101 accaggaggt tgaccgcagg acgtgtgtgc ctatgaatca tctctggcct gaccaggccc 2161 cgtacaccgt gtgcaacagc tccctctcgg agtacggagt cctgggcttt gagctgggct 2221 atgccatggc cagccccaat gccctggtcc tctgggaggc ccagtttggg gacttccaca 2281 acacggccca gtgcatcatc gaccagttca tcagcaccgg ccaggccaag tgggtgcggc 2341 ataatggcat tgtgctgctg ctgccccatg gcatggaagg catgggccca gagcactcgt 2401 cagcgaggcc cgaaaggttc ctgcagatga gcaatgatga ctcggatgcc taccctgcat 2461 tcaccaagga cttcgaggtg agccagctct atgactgcaa ctggatcgtg gtcaactgct 2521 ccacaccggc caactacttc cacgtgctgc gccggcagat cctgctgccc ttccgcaagc 2581 cgctgattat cttcacacct aaatctctgc tgaggcaccc agaggccaag tccagctttg 2641 accaaatggt atccgggacc agcttccagc gggtgattcc tgaagatggg gccgcagcac 2701 gggcccctga gcaggtgcag cggctcatct tctgcacggg aaaggtgtac tatgacctgg 2761 tgaaggagcg gagcagccag gacctggagg agaaagtggc catcacgcgc ctggagcaga 2821 tctctccatt ccccttcgac ctgatcaagc aggaggcaga gaagtaccca ggtgcggagc 2881 tggcctggtg tcaggaggag cacaagaaca tgggctacta tgactacatc agcccacgct 2941 tcatgaccat cctgaggcgc gcacggccca tatggtatgt tggccgggac ccagcggctg 3001 caccagccac aggaaacagg aacactcacc tggtgtcact gaagaagttt ctggatactg 3061 ccttcaatct ccaggccttt gagggcaaga cattttaccc aactttcttg tacaaagtgg 3121 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 3181 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta