Construct: ORF ccsbBroad304_08643
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011458.1_s304c1, BRDN0000409520
- Derived from:
- ccsbBroadEn_08643
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A9 (56606)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08643
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | NM_001001290.1 | 99.6% | 99.6% | (many diffs) |
| 2 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | NM_020041.3 | 91.7% | 91.4% | (many diffs) |
| 3 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513859.3 | 91% | 90.2% | (many diffs) |
| 4 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513860.3 | 90.9% | 90.3% | (many diffs) |
| 5 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_006713968.4 | 86.3% | 86.5% | (many diffs) |
| 6 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513857.1 | 83.1% | 77.4% | (many diffs) |
| 7 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513858.1 | 83.1% | 77.4% | (many diffs) |
| 8 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008457.2 | 81.2% | 80.4% | (many diffs) |
| 9 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_006713969.2 | 81.2% | 78.9% | (many diffs) |
| 10 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008458.2 | 81.1% | 78.4% | (many diffs) |
| 11 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513861.3 | 81% | 78.6% | (many diffs) |
| 12 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008460.2 | 78.3% | 78.8% | (many diffs) |
| 13 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454152.1 | 77.1% | 70.1% | (many diffs) |
| 14 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513856.3 | 77.1% | 71.4% | (many diffs) |
| 15 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454150.1 | 75.9% | 70% | (many diffs) |
| 16 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513865.2 | 74.4% | 72% | (many diffs) |
| 17 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454153.1 | 72.6% | 71.1% | (many diffs) |
| 18 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513866.2 | 72.3% | 70.8% | (many diffs) |
| 19 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XR_925341.3 | 71.5% | (many diffs) | |
| 20 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_024454151.1 | 66.3% | 60.7% | (many diffs) |
| 21 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513868.2 | 65.8% | 60.3% | (many diffs) |
| 22 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513864.2 | 65.1% | 59.3% | (many diffs) |
| 23 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513862.3 | 64.7% | 59.5% | (many diffs) |
| 24 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_017008459.1 | 62.1% | 56.5% | (many diffs) |
| 25 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XM_011513867.3 | 56.7% | 51% | (many diffs) |
| 26 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XR_001741291.1 | 40.5% | (many diffs) | |
| 27 | human | 56606 | SLC2A9 | solute carrier family 2 mem... | XR_001741290.1 | 27.7% | (many diffs) | |
| 28 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | NM_001012363.2 | 79.1% | 82.1% | (many diffs) |
| 29 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_006503683.3 | 79.1% | 82.1% | (many diffs) |
| 30 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_006503684.3 | 79.1% | 82.1% | (many diffs) |
| 31 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_006503685.3 | 79.1% | 82.1% | (many diffs) |
| 32 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_011240688.2 | 79.1% | 82.1% | (many diffs) |
| 33 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_011240689.2 | 79.1% | 82.1% | (many diffs) |
| 34 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_011240690.1 | 79.1% | 82.1% | (many diffs) |
| 35 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | NM_145559.2 | 62.3% | 64.9% | (many diffs) |
| 36 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_006503686.3 | 62.3% | 64.9% | (many diffs) |
| 37 | mouse | 117591 | Slc2a9 | solute carrier family 2 (fa... | XM_006503687.3 | 62.3% | 64.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1599
- ORF length:
- 1533
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat gctcagtaaa aaggaccgag gagaagatga agaaagtgat tcagcgaaaa 121 agaaattgga ctggtcctgc tcgctcctcg tggcctccct cgcgggcgcc ttcggctcct 181 ccttcctcta cggctacaac ctgtcggtgg tgaatgcccc caccccgtac atcaaggcct 241 tttacaatga gtcatgggaa agaaggcatg gacgtccaat agacccagac actctgactc 301 tgctctggtc tgtgactgtg tccatattcg ccatcggtgg acttgtgggg acattaattg 361 tgaagatgat tggaaaggtt cttgggagga agcacacttt gctggccaat aatgggtttg 421 caatttctgc tgcattgctg atggcctgct cgctccaggc aggagccttt gaaatgctca 481 tcgtgggacg cttcatcatg ggcatagatg gaggcgtcgc cctcagtgtg ctccccatgt 541 acctcagtga gatctcaccc aaggagatcc gtggctctct ggggcaggtg actgccatct 601 ttatctgcat tggcgtgttc actgggcagc ttctgggcct gcccgagctg ctgggaaagg 661 agagtacctg gccatacctg tttggagtga ttgtggtccc tgccgttgtc cagctgctga 721 gccttccctt tctcccggac agcccacgct acctgctctt ggagaagcac aacgaggcaa 781 gagctgtgaa agccttccaa acgttcttgg gtaaagcaga cgtttcccaa gaggtagagg 841 aggtcctggc tgagagccgc gtgcagagga gcatccgcct ggtgtccgtg ctggagctgc 901 tgagagctcc ctacgtccgc tggcaggtgg tcaccgtgat tgtcaccatg gcctgctacc 961 agctctgtgg cctcaatgca atttggttct ataccaacag catctttgga aaagctggga 1021 tccctctggc aaagatccca tacgtcacct tgagtacagg gggcatcgag actttggctg 1081 ccgtcttctc tggtttggtc attgagcacc tgggacggag acccctcctc attggtggct 1141 ttgggctcat gggcctcttc tttgggaccc tcaccatcac gctgaccctg caggaccacg 1201 ccccctgggt cccctacctg agtatcgtgg gcattctggc catcatcgcc tctttctgca 1261 gtgggccagg tggcatcccg ttcatcttga ctggtgagtt cttccagcaa tctcagcggc 1321 cggctgcctt catcattgca ggcaccgtca actggctctc caactttgct gttgggctcc 1381 tcttcccatt cattcagaaa agtctggaca cctactgttt cctagtcttt gctacaattt 1441 gtatcacagg tgctatctac ctgtattttg tgctgcctga gaccaaaaac agaacctatg 1501 cagaaatcag ccaggcattt tccaaaagga acaaagcata cccaccagaa gagaaaatcg 1561 actcagctgt cactgatggt aagataaatg gaaggcctta cccaactttc ttgtacaaag 1621 tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta 1681 gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta