Construct: ORF ccsbBroad304_08720
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004036.1_s304c1, BRDN0000404694
- Derived from:
- ccsbBroadEn_08720
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX14 (57231)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08720
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57231 | SNX14 | sorting nexin 14 | NM_153816.6 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350533.1 | 99.7% | 99.6% | (many diffs) |
| 3 | human | 57231 | SNX14 | sorting nexin 14 | NM_001297614.2 | 98.8% | 98.8% | (many diffs) |
| 4 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350534.1 | 98.7% | 98.7% | (many diffs) |
| 5 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350535.1 | 98.5% | 98.5% | (many diffs) |
| 6 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350532.1 | 97.6% | 97.6% | (many diffs) |
| 7 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350536.1 | 95.1% | 95.1% | (many diffs) |
| 8 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350537.1 | 95% | 95% | (many diffs) |
| 9 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350538.1 | 94.7% | 94.7% | (many diffs) |
| 10 | human | 57231 | SNX14 | sorting nexin 14 | NM_001304479.1 | 94.3% | 94.2% | (many diffs) |
| 11 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350539.1 | 94.2% | 94.1% | (many diffs) |
| 12 | human | 57231 | SNX14 | sorting nexin 14 | NM_020468.5 | 94.2% | 94.1% | (many diffs) |
| 13 | human | 57231 | SNX14 | sorting nexin 14 | XM_017011090.1 | 94.2% | 94.1% | (many diffs) |
| 14 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350540.1 | 94% | 93.9% | (many diffs) |
| 15 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350541.1 | 93% | 93% | (many diffs) |
| 16 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350542.1 | 89.6% | 89.6% | (many diffs) |
| 17 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350543.1 | 89.5% | 89.5% | (many diffs) |
| 18 | human | 57231 | SNX14 | sorting nexin 14 | XM_024446498.1 | 89.5% | 89.5% | (many diffs) |
| 19 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350544.1 | 89.2% | 89.2% | (many diffs) |
| 20 | human | 57231 | SNX14 | sorting nexin 14 | XM_011535977.2 | 89% | 88.1% | (many diffs) |
| 21 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350545.1 | 84.2% | 83.7% | (many diffs) |
| 22 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350546.1 | 84.2% | 83.7% | (many diffs) |
| 23 | human | 57231 | SNX14 | sorting nexin 14 | NR_146775.1 | 74% | (many diffs) | |
| 24 | human | 57231 | SNX14 | sorting nexin 14 | NR_146774.1 | 73.9% | (many diffs) | |
| 25 | human | 57231 | SNX14 | sorting nexin 14 | NR_146778.1 | 70.7% | (many diffs) | |
| 26 | human | 57231 | SNX14 | sorting nexin 14 | NR_146779.1 | 70.6% | (many diffs) | |
| 27 | human | 57231 | SNX14 | sorting nexin 14 | NR_146777.1 | 70.6% | (many diffs) | |
| 28 | human | 57231 | SNX14 | sorting nexin 14 | NR_146776.1 | 67.4% | (many diffs) | |
| 29 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350547.1 | 62.8% | 63% | (many diffs) |
| 30 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350548.1 | 59.2% | 59.3% | 0_1ins1155;117A>G;1312C>T |
| 31 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350549.1 | 59.2% | 59.3% | 0_1ins1155;117A>G;1312C>T |
| 32 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350550.1 | 59.2% | 59.3% | 0_1ins1155;117A>G;1312C>T |
| 33 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350551.1 | 59.2% | 59.3% | 0_1ins1155;117A>G;1312C>T |
| 34 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350552.1 | 59.2% | 59.3% | 0_1ins1155;117A>G;1312C>T |
| 35 | human | 57231 | SNX14 | sorting nexin 14 | XM_024446499.1 | 59.2% | 59.3% | 0_1ins1155;117A>G;1312C>T |
| 36 | human | 57231 | SNX14 | sorting nexin 14 | NM_001350553.1 | 58.2% | 58.3% | (many diffs) |
| 37 | mouse | 244962 | Snx14 | sorting nexin 14 | NM_172926.3 | 86.7% | 93.6% | (many diffs) |
| 38 | mouse | 244962 | Snx14 | sorting nexin 14 | XM_006511183.3 | 83.9% | 90.6% | (many diffs) |
| 39 | mouse | 244962 | Snx14 | sorting nexin 14 | XR_001778903.1 | 57.4% | (many diffs) | |
| 40 | mouse | 244962 | Snx14 | sorting nexin 14 | XR_001778902.1 | 28.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2904
- ORF length:
- 2838
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggt gccctgggtg cggacgatgg ggcagaagct gaagcagcgg ctgcgactgg 121 acgtgggacg cgagatctgc cgccagtacc cgctgttctg cttcctgctg ctctgtctca 181 gcgccgcctc cctgcttctt aacaggtata ttcatatttt aatgatcttc tggtcatttg 241 ttgttggagt tgtcacattc tactgctcac taggacctga ttctctctta ccaaatatat 301 tcttcacaat aaaatacaaa cccaagcagt taggacttca ggaattattt cctcaaggtc 361 atagctgtgc tgtttgtggt aaagtgaaat gtaaacgaca taggccttct ttgctacttg 421 aaaactacca gccatggcta gacctgaaaa tttcttccaa ggttgatgca tctctctcag 481 aggttcttga attagtgttg gaaaactttg tttatccgtg gtacagggat gtgacagatg 541 atgaatcctt tgttgatgaa ctgagaataa cattacgttt ttttgcatct gtcttaataa 601 gaaggattca caaggtggat attccatcta ttataaccaa gaaactatta aaagcagcaa 661 tgaagcatat agaagtgata gttaaagcca gacagaaagt aaaaaataca gagtttttac 721 agcaagctgc tttagaagaa tatggtccag agcttcatgt tgctttgaga agtcgaagag 781 atgaattgca ctatttaagg aaacttactg aactgctttt tccttatatt ttgcctccta 841 aagcaacaga ctgcagatct ctgaccttac ttataagaga gattctgtct ggctctgtgt 901 tccttccttc tttggatttc ctagctgatc cagatactgt gaatcatttg cttatcatct 961 tcatagatga cagtccacct gaaaaagcaa ctgaaccggc ttctcctttg gttcgattct 1021 tgcagaaatt tgcagaacct agaaataaaa agccatctgt gctgaagtta gaattgaagc 1081 aaatcagaga gcaacaagat cttttatttc gttttatgaa cttcctgaaa caagaaggcg 1141 cagtgcacgt gttgcagttt tgtttgactg tggaggaatt taatgataga attttacgac 1201 cagaattatc aaatgatgaa atgctgtctc ttcatgaaga attgcagaag atttataaaa 1261 catactgttt ggatgaaagt attgacaaaa ttagatttga tcccttcatt gtagaagaga 1321 ttcaaagaat tgctgagggc ccatacatag atgttgtgaa acttcaaact atgagatgtc 1381 tttttgaagc atatgaacat gttctttccc ttttggagaa tgtatttact cctatgttct 1441 gccatagtga tgagtatttc agacaacttt taagaggtgc agaatcacca acacgcaatt 1501 caaaattgaa cagaggtagc ctaagtttgg atgattttcg gaacacacag aaaaggggag 1561 aatcatttgg aatcagcaga ataggtagca aaattaaagg agtattcaaa agtaccacaa 1621 tggagggagc tatgttgcct aattatggtg tagctgaagg tgaagatgat tttattgaag 1681 aaggtattgt tgtaatggaa gatgattctc cagtggaggc tgtgagcaca cctaatactc 1741 cccgaaacct tgctgcatgg aaaattagca ttccatatgt agactttttt gaggatccct 1801 cctctgaaag gaaggagaaa aaagaaagaa ttcctgtgtt ttgtattgat gttgaaagaa 1861 atgatagaag agcagttgga cacgagcctg aacattggtc tgtctataga agatatcttg 1921 aattctatgt acttgaatca aaactaacag aatttcatgg tgcatttcct gatgcccagc 1981 ttccttctaa gaggatcatt ggccccaaaa attatgaatt cttaaagtca aagagggaag 2041 agttccaaga atatctacag aaacttctgc agcatccaga actgagtaat agtcaacttc 2101 tggcagactt tctttcccct aatggtgggg aaacacaatt tcttgataag atactaccag 2161 atgtaaatct tgggaaaatt ataaaatctg ttcctggaaa actaatgaaa gagaaaggtc 2221 agcatttgga accttttatc atgaatttca ttaattcttg tgagtctcca aagcctaaac 2281 caagtagacc agaactgacc attctcagcc ctacttcaga aaacaacaag aagcttttca 2341 atgatctgtt taaaaataat gcaaaccgtg ctgaaaatac agagagaaag caaaatcaga 2401 attattttat ggaggtgatg actgtagaag gagtctatga ttacctgatg tatgtaggac 2461 gggtagtttt ccaggttcct gactggcttc atcatctctt aatgggaact cgaatcctct 2521 ttaaaaacac cttggaaatg tatactgatt actatcttca gtgtaaacta gaacagctat 2581 ttcaggagca ccgtttggtc tcactcataa cacttctcag agatgctata ttctgtgaaa 2641 acactgaacc tcgctctctc caagataagc aaaaaggagc aaaacagact tttgaagaaa 2701 tgatgaatta cattccagat ctgttagtca agtgtattgg tgaagaaacc aagtatgaaa 2761 gcatcagact tctgtttgat ggcttacagc aaccagtact caacaagcag ctgacttatg 2821 ttttattgga cattgtgata caggaactgt ttccagagct caataaggta caaaaggaag 2881 ttacctctgt gacatcttgg atgtacccaa ctttcttgta caaagtggtt ggtaagccta 2941 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 3001 gcgttaagtc gacaatcaac ctctggatta