Construct: ORF ccsbBroad304_08739

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002607.1_s304c1, BRDN0000461672
Derived from:
ccsbBroadEn_08739
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COG6 (57511)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08739
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57511 COG6 component of oligomeric gol... NM_020751.3 99.9% 100% 738A>G
2 human 57511 COG6 component of oligomeric gol... XM_011535168.1 93.5% 93.5% 738A>G;1827_1961del
3 human 57511 COG6 component of oligomeric gol... NM_001145079.2 93.2% 92.6% (many diffs)
4 human 57511 COG6 component of oligomeric gol... NR_026745.1 53.3% (many diffs)
5 mouse 67542 Cog6 component of oligomeric gol... NM_026225.3 85.4% 91% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2040
ORF length:
1971
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcagagggc agcggggaag tggtcgcagt gtctgcgacc ggggctgcca
121acggcctcaa caatggggca ggcgggacct cggcgacgac ctgcaacccg ctgtcgcgca
181agctgcataa gatcctggag acgcggctgg acaacgacaa ggagatgtta gaagctctca
241aggcactttc aacctttttt gttgaaaata gtctgcggac tcgaagaaat ttacgtggag
301atattgaacg taaaagttta gccatcaatg aagaatttgt aagcattttc aaggaagtga
361aggaggaact tgaaagcata agcgaagatg ttcaagcaat gagcaactgt tgtcaagata
421tgacaagtcg cctacaggca gcaaaggaac agactcaaga tttaatagta aaaaccacta
481agcttcaatc tgaaagccaa aaattagaga taagagctca agttgcagat gccttcttat
541ccaagttcca actgacttct gatgaaatga gtcttctccg aggtacaaga gaaggaccca
601ttactgagga ttttttcaag gcactgggaa gagtaaaaca gattcataat gatgtcaaag
661ttctcttgcg tacaaatcaa caaacggcag gtttagaaat tatggaacag atggccttac
721ttcaagaaac ggcttatgaa agactttacc gatgggctca aagtgaatgc agaacattga
781cacaagaatc atgtgacgta tctccggtat tgacacaggc aatggaagcc ctgcaggaca
841gacctgtctt atataaatat accttagatg aatttggaac agccagaaga agtacagttg
901ttcgtggatt tattgatgcg ctcacaagag ggggccccgg aggtacacct agaccaattg
961aaatgcattc tcatgaccct ttgaggtatg taggagatat gttggcttgg ctccatcaag
1021ctactgcttc tgaaaaggaa caccttgaag ctctcttaaa gcatgtaact acacaaggtg
1081ttgaagaaaa tattcaagaa gttgttgggc atatcactga aggtgtgtgc aggcctctaa
1141aggttcgaat tgagcaagta atagttgctg aacctggggc agttttatta tataaaattt
1201ctaatctcct caaattttat caccatacaa tcagtggtat tgttggaaat agtgcaactg
1261cattattgac taccattgaa gaaatgcatt tgctaagcaa aaaaatattc ttcaatagct
1321tgagtcttca tgcaagtaaa ttaatggaca aggttgaact cccaccacct gatcttggac
1381caagttctgc actaaatcag acactcatgt tgctgcgtga agttttagca tctcacgatt
1441cttcagttgt accattagat gctcgtcaag ctgattttgt gcaggtttta tcatgtgtct
1501tggatcctct cctacagatg tgtactgtat cagccagcaa tttaggcaca gctgacatgg
1561ccactttcat ggtcaattca ctatatatga tgaagacaac attagctcta tttgaattca
1621ctgacagacg tctggaaatg ctacagtttc agatcgaagc acatttggac acacttataa
1681atgagcaagc ctcttatgtt ttaactaggg taggcttgag ttacatctat aacactgtac
1741agcaacataa acctgaacag ggctctttag ctaatatgcc caacctagat tctgtgacac
1801tgaaggctgc aatggttcag tttgatcgtt atctgtcagc cccagacaac ctattgatac
1861cacagctgaa ctttcttcta agtgccacag tgaaagagca gatcgtaaaa caatctacag
1921aattagtctg cagagcctat ggtgaagtgt atgcagccgt gatgaatcca atcaatgaat
1981acaaagatcc agagaacatt cttcaccgat cgccgcagca agtgcagacg cttctttcct
2041tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
2101attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
2161ggatta

Download FASTA (ORF) (Full)