Construct: ORF ccsbBroadEn_08739
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002607.1_s300c1, BRDN0000456713
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COG6 (57511)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57511 | COG6 | component of oligomeric gol... | NM_020751.3 | 99.9% | 100% | 738A>G |
| 2 | human | 57511 | COG6 | component of oligomeric gol... | XM_011535168.1 | 93.5% | 93.5% | 738A>G;1827_1961del |
| 3 | human | 57511 | COG6 | component of oligomeric gol... | NM_001145079.2 | 93.2% | 92.6% | (many diffs) |
| 4 | human | 57511 | COG6 | component of oligomeric gol... | NR_026745.1 | 53.3% | (many diffs) | |
| 5 | mouse | 67542 | Cog6 | component of oligomeric gol... | NM_026225.3 | 85.4% | 91% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2040
- ORF length:
- 1971
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGAGGGC AGCGGGGAAG TGGTCGCAGT GTCTGCGACC GGGGCTGCCA 121 ACGGCCTCAA CAATGGGGCA GGCGGGACCT CGGCGACGAC CTGCAACCCG CTGTCGCGCA 181 AGCTGCATAA GATCCTGGAG ACGCGGCTGG ACAACGACAA GGAGATGTTA GAAGCTCTCA 241 AGGCACTTTC AACCTTTTTT GTTGAAAATA GTCTGCGGAC TCGAAGAAAT TTACGTGGAG 301 ATATTGAACG TAAAAGTTTA GCCATCAATG AAGAATTTGT AAGCATTTTC AAGGAAGTGA 361 AGGAGGAACT TGAAAGCATA AGCGAAGATG TTCAAGCAAT GAGCAACTGT TGTCAAGATA 421 TGACAAGTCG CCTACAGGCA GCAAAGGAAC AGACTCAAGA TTTAATAGTA AAAACCACTA 481 AGCTTCAATC TGAAAGCCAA AAATTAGAGA TAAGAGCTCA AGTTGCAGAT GCCTTCTTAT 541 CCAAGTTCCA ACTGACTTCT GATGAAATGA GTCTTCTCCG AGGTACAAGA GAAGGACCCA 601 TTACTGAGGA TTTTTTCAAG GCACTGGGAA GAGTAAAACA GATTCATAAT GATGTCAAAG 661 TTCTCTTGCG TACAAATCAA CAAACGGCAG GTTTAGAAAT TATGGAACAG ATGGCCTTAC 721 TTCAAGAAAC GGCTTATGAA AGACTTTACC GATGGGCTCA AAGTGAATGC AGAACATTGA 781 CACAAGAATC ATGTGACGTA TCTCCGGTAT TGACACAGGC AATGGAAGCC CTGCAGGACA 841 GACCTGTCTT ATATAAATAT ACCTTAGATG AATTTGGAAC AGCCAGAAGA AGTACAGTTG 901 TTCGTGGATT TATTGATGCG CTCACAAGAG GGGGCCCCGG AGGTACACCT AGACCAATTG 961 AAATGCATTC TCATGACCCT TTGAGGTATG TAGGAGATAT GTTGGCTTGG CTCCATCAAG 1021 CTACTGCTTC TGAAAAGGAA CACCTTGAAG CTCTCTTAAA GCATGTAACT ACACAAGGTG 1081 TTGAAGAAAA TATTCAAGAA GTTGTTGGGC ATATCACTGA AGGTGTGTGC AGGCCTCTAA 1141 AGGTTCGAAT TGAGCAAGTA ATAGTTGCTG AACCTGGGGC AGTTTTATTA TATAAAATTT 1201 CTAATCTCCT CAAATTTTAT CACCATACAA TCAGTGGTAT TGTTGGAAAT AGTGCAACTG 1261 CATTATTGAC TACCATTGAA GAAATGCATT TGCTAAGCAA AAAAATATTC TTCAATAGCT 1321 TGAGTCTTCA TGCAAGTAAA TTAATGGACA AGGTTGAACT CCCACCACCT GATCTTGGAC 1381 CAAGTTCTGC ACTAAATCAG ACACTCATGT TGCTGCGTGA AGTTTTAGCA TCTCACGATT 1441 CTTCAGTTGT ACCATTAGAT GCTCGTCAAG CTGATTTTGT GCAGGTTTTA TCATGTGTCT 1501 TGGATCCTCT CCTACAGATG TGTACTGTAT CAGCCAGCAA TTTAGGCACA GCTGACATGG 1561 CCACTTTCAT GGTCAATTCA CTATATATGA TGAAGACAAC ATTAGCTCTA TTTGAATTCA 1621 CTGACAGACG TCTGGAAATG CTACAGTTTC AGATCGAAGC ACATTTGGAC ACACTTATAA 1681 ATGAGCAAGC CTCTTATGTT TTAACTAGGG TAGGCTTGAG TTACATCTAT AACACTGTAC 1741 AGCAACATAA ACCTGAACAG GGCTCTTTAG CTAATATGCC CAACCTAGAT TCTGTGACAC 1801 TGAAGGCTGC AATGGTTCAG TTTGATCGTT ATCTGTCAGC CCCAGACAAC CTATTGATAC 1861 CACAGCTGAA CTTTCTTCTA AGTGCCACAG TGAAAGAGCA GATCGTAAAA CAATCTACAG 1921 AATTAGTCTG CAGAGCCTAT GGTGAAGTGT ATGCAGCCGT GATGAATCCA ATCAATGAAT 1981 ACAAAGATCC AGAGAACATT CTTCACCGAT CGCCGCAGCA AGTGCAGACG CTTCTTTCCT 2041 TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 2101 acgaac