Construct: ORF ccsbBroad304_08794
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016377.1_s304c1, BRDN0000461429
- Derived from:
- ccsbBroadEn_08794
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRMT11 (60487)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08794
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001031712.3 | 99.9% | 99.7% | 689T>A |
| 2 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350580.1 | 97.3% | 97.1% | 71_72ins36;653T>A |
| 3 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350581.1 | 86.3% | 86.1% | 0_1ins189;500T>A |
| 4 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350582.1 | 86.3% | 86.1% | 0_1ins189;500T>A |
| 5 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350583.1 | 86.3% | 86.1% | 0_1ins189;500T>A |
| 6 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350584.1 | 86.3% | 86.1% | 0_1ins189;500T>A |
| 7 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146798.1 | 67.9% | (many diffs) | |
| 8 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146800.1 | 67.2% | (many diffs) | |
| 9 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146796.1 | 67.1% | (many diffs) | |
| 10 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146795.1 | 64.7% | (many diffs) | |
| 11 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146801.1 | 64.4% | (many diffs) | |
| 12 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146802.1 | 60.4% | (many diffs) | |
| 13 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350585.1 | 57.1% | 57% | 0_1ins594;95T>A |
| 14 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | XM_017011168.1 | 57.1% | 57% | 0_1ins594;95T>A |
| 15 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350586.1 | 48.1% | 44.9% | (many diffs) |
| 16 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350587.1 | 48.1% | 44.9% | (many diffs) |
| 17 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350588.1 | 48.1% | 44.9% | (many diffs) |
| 18 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350589.1 | 48.1% | 44.9% | (many diffs) |
| 19 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350590.1 | 48.1% | 44.9% | (many diffs) |
| 20 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350591.1 | 48.1% | 44.9% | (many diffs) |
| 21 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350592.1 | 48.1% | 44.9% | (many diffs) |
| 22 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350593.1 | 48.1% | 44.9% | (many diffs) |
| 23 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350594.1 | 48.1% | 44.9% | (many diffs) |
| 24 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350595.1 | 48.1% | 44.9% | (many diffs) |
| 25 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350596.1 | 48.1% | 44.9% | (many diffs) |
| 26 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NM_001350597.1 | 48.1% | 44.9% | (many diffs) |
| 27 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | XM_024446516.1 | 48.1% | 44.9% | (many diffs) |
| 28 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146799.1 | 35.1% | 1_121del;810T>A;1511_3953del | |
| 29 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146797.1 | 31.5% | (many diffs) | |
| 30 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | XR_002956294.1 | 30.6% | (many diffs) | |
| 31 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146804.2 | 30.1% | (many diffs) | |
| 32 | human | 60487 | TRMT11 | tRNA methyltransferase 11 h... | NR_146803.2 | 29.3% | (many diffs) | |
| 33 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | NM_028604.2 | 89% | 91.3% | (many diffs) |
| 34 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_006512877.3 | 78.6% | 80.9% | (many diffs) |
| 35 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_011243211.2 | 77.6% | 79.4% | (many diffs) |
| 36 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_011243212.2 | 76.4% | 77.7% | (many diffs) |
| 37 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_006512880.3 | 51.4% | 52.4% | (many diffs) |
| 38 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_006512881.3 | 47.5% | 46.1% | (many diffs) |
| 39 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_006512882.3 | 47.3% | 46.1% | (many diffs) |
| 40 | mouse | 73681 | Trmt11 | tRNA methyltransferase 11 | XM_006512884.3 | 46% | 47% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1458
- ORF length:
- 1389
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcgctgtcg tgtaccctta acaggtatct gctcctcatg gcgcaggagc 121 atctggagtt ccgcctgccg gaaataaagt ctttgctttt gctttttgga ggtcagtttg 181 ccagcagtca agaaacttat ggaaagtcac cattttggat tcttagcatt ccctctgaag 241 atattgcaag aaatttgatg aaacggacag tgtgtgccaa gtctatattt gaactatggg 301 gtcatggaca atctcctgag gagctgtaca gttctcttaa aaactaccct gtggagaaga 361 tggttccatt tctacattcg gactctacat ataaaataaa gattcacact tttaataaga 421 cattgacaca agaagagaaa atcaagcgaa tagatgcact tgaatttctg ccatttgaag 481 gaaaagtgaa tttaaagaaa ccgcaacatg tattttctgt tttggaggat tatggtttag 541 acccaaactg catccctgag aatccacata atatttattt tggtagatgg attgcagatg 601 gacagagaga gcttattgag tcatacagtg tcaaaaagag acactttatt ggaaatacaa 661 gtatggatgc tggtttgtca ttcattatgg ctaaccatgg aaaagtgaaa gaaaatgata 721 ttgtctttga tccatttgtt ggaacaggtg gcctgcagat agcatgtgct cattttggtg 781 catatgtgta tgggacagac atagactaca acacagttca tggcttggga aaggctacta 841 ggaaaaacca gaagtggaga ggaccagatg aaaacattag ggccaatctt cgtcaatatg 901 gtttagagaa gtattacctt gatgtcctgg tttcagatgc atctaaacct tcctggagga 961 agggcacata ttttgatgca atcattactg atcctccata tggtatcaga gaatctacaa 1021 gaagaacagg ttcacagaag gagataccaa aggggataga aaaatgggaa aaatgtccag 1081 aaagccatgt tcctgtttcc ttgagttatc atctgagtga tatgtttctt gacctgttaa 1141 acttcgcagc tgagaccctc gttttaggtg gaagactagt ctattggtta ccggtgtata 1201 cgccagaata cactgaagag atggtgcctt ggcacccttg cctggaactc gttagcaact 1261 gcgagcagaa gctttccagt cacacatcaa ggcgcttgat cacaatggaa aaggtgaaga 1321 aatttgagaa tcgggaccag tattcacatc tgctaagtga tcattttctg ccataccaag 1381 gtcataattc cttccgtgag aaatatttta gtggggtaac aaaaagaatt gccaaggaag 1441 aaaaatccac ccaggaattg ccaactttct tgtacaaagt ggttggtaag cctatcccta 1501 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 1561 agtcgacaat caacctctgg atta