Construct: ORF ccsbBroad304_09151
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004588.1_s304c1, BRDN0000462399
- Derived from:
- ccsbBroadEn_09151
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF644 (84146)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09151
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84146 | ZNF644 | zinc finger protein 644 | NM_201269.3 | 99.9% | 99.9% | 2008C>A |
| 2 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002488.2 | 99.9% | 99.9% | 2008C>A |
| 3 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002489.2 | 99.9% | 99.9% | 2008C>A |
| 4 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002490.2 | 99.9% | 99.9% | 2008C>A |
| 5 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002491.2 | 99.9% | 99.9% | 2008C>A |
| 6 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_005271257.5 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 7 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_005271260.5 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 8 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_011542258.3 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 9 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_011542259.3 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 10 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_011542260.3 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 11 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_011542261.3 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 12 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002487.2 | 96.9% | 96.9% | 2008C>A;3686_3808del |
| 13 | human | 84146 | ZNF644 | zinc finger protein 644 | NM_016620.3 | 7.8% | 7.4% | (many diffs) |
| 14 | human | 84146 | ZNF644 | zinc finger protein 644 | NM_032186.4 | 7.8% | 7.4% | (many diffs) |
| 15 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002492.2 | 7.8% | 7.4% | (many diffs) |
| 16 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002493.2 | 7.8% | 7.4% | (many diffs) |
| 17 | human | 84146 | ZNF644 | zinc finger protein 644 | XM_017002494.1 | 7.8% | 7.4% | (many diffs) |
| 18 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_001363318.1 | 83.9% | 82.6% | (many diffs) |
| 19 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_001363319.1 | 83.9% | 82.6% | (many diffs) |
| 20 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_001363320.1 | 83.9% | 82.6% | (many diffs) |
| 21 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_001363321.1 | 83.9% | 82.6% | (many diffs) |
| 22 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_026856.2 | 83.9% | 82.6% | (many diffs) |
| 23 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254686.1 | 83.9% | 82.6% | (many diffs) |
| 24 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254687.1 | 83.9% | 82.6% | (many diffs) |
| 25 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535079.2 | 83.4% | 82.1% | (many diffs) |
| 26 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535083.2 | 83.4% | 82.1% | (many diffs) |
| 27 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535084.3 | 83.4% | 82.1% | (many diffs) |
| 28 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535085.2 | 83.4% | 82.1% | (many diffs) |
| 29 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535086.2 | 83.4% | 82.1% | (many diffs) |
| 30 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535087.1 | 83.4% | 82.1% | (many diffs) |
| 31 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249511.1 | 83.4% | 82.1% | (many diffs) |
| 32 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249512.1 | 83.4% | 82.1% | (many diffs) |
| 33 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254662.1 | 83.4% | 82.1% | (many diffs) |
| 34 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254663.1 | 83.4% | 82.1% | (many diffs) |
| 35 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254664.1 | 83.4% | 82.1% | (many diffs) |
| 36 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254665.1 | 83.4% | 82.1% | (many diffs) |
| 37 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254666.1 | 83.4% | 82.1% | (many diffs) |
| 38 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254667.1 | 83.4% | 82.1% | (many diffs) |
| 39 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254668.1 | 83.4% | 82.1% | (many diffs) |
| 40 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254669.1 | 83.4% | 82.1% | (many diffs) |
| 41 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254670.1 | 83.4% | 82.1% | (many diffs) |
| 42 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254671.1 | 83.4% | 82.1% | (many diffs) |
| 43 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254672.1 | 83.4% | 82.1% | (many diffs) |
| 44 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254673.1 | 83.4% | 82.1% | (many diffs) |
| 45 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254674.1 | 83.4% | 82.1% | (many diffs) |
| 46 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254675.1 | 83.4% | 82.1% | (many diffs) |
| 47 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254676.1 | 83.4% | 82.1% | (many diffs) |
| 48 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254677.1 | 83.4% | 82.1% | (many diffs) |
| 49 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254678.1 | 83.4% | 82.1% | (many diffs) |
| 50 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254679.1 | 83.4% | 82.1% | (many diffs) |
| 51 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254680.1 | 83.4% | 82.1% | (many diffs) |
| 52 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_001363322.1 | 83.2% | 81.9% | (many diffs) |
| 53 | mouse | 52397 | Zfp644 | zinc finger protein 644 | NM_001363323.1 | 82.2% | 81.2% | (many diffs) |
| 54 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535090.3 | 81.7% | 80.7% | (many diffs) |
| 55 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249516.1 | 81.7% | 80.7% | (many diffs) |
| 56 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249517.1 | 81.7% | 80.7% | (many diffs) |
| 57 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_017320974.1 | 81.7% | 80.7% | (many diffs) |
| 58 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254681.1 | 81.7% | 80.7% | (many diffs) |
| 59 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254682.1 | 81.7% | 80.7% | (many diffs) |
| 60 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254683.1 | 81.7% | 80.7% | (many diffs) |
| 61 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254684.1 | 81.5% | 80.2% | (many diffs) |
| 62 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254685.1 | 81.5% | 80.2% | (many diffs) |
| 63 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249524.1 | 7.3% | 7.3% | (many diffs) |
| 64 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249526.1 | 7.3% | 7.3% | (many diffs) |
| 65 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249527.1 | 7.3% | 7.3% | (many diffs) |
| 66 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_011249528.3 | 7.3% | 7.3% | (many diffs) |
| 67 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_030254688.1 | 7.3% | 7.3% | (many diffs) |
| 68 | mouse | 52397 | Zfp644 | zinc finger protein 644 | XM_006535097.4 | 7.1% | 7.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4050
- ORF length:
- 3981
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gagatcgttc ttgcagcaag atgttaataa gacaaaatct agactaaatg 121 tgttaaatgg gcttgccaac aatatggatg atttgaagat aaacaccgat attactggtg 181 ctaaagaaga actcctagat gacaacaatt ttatctcaga caaagagagc ggagttcata 241 agccaaaaga ttgtcaaaca tcatttcaga aaaataatac gttgactctg cctgaagaac 301 tgtcaaagga caaatctgaa aacgccttaa gtggaggcca gtctagtcta tttatacatg 361 ctggtgctcc tactgtttct agtgaaaact ttatcttgcc taaaggagct gctgttaatg 421 gaccagtttc acactcctcc ttaactaaga cttccaatat gaataaaggc agtgtttcat 481 taaccactgg acagcctgtg gatcagccaa caacagaatc ttgttcaact ttgaaggtag 541 cagctgatct tcagctgtct acaccacaga aagcaagtca acaccaagtt ttatttttgt 601 tatcagatgt agcacatgct aagaatccca cccattccaa taaaaaacta cctacctctg 661 cttcagttgg ttgtgacatt cagaattcag tagggagtaa tataaagtca gatggcactt 721 taataaatca agtagaggtg ggtgaggatg gtgaagattt attggtgaaa gatgattgtg 781 tcaatacagt aacgggaatt tcctcaggta cagatggatt taggtcagaa aatgatacaa 841 actgggatcc ccaaaaagag ttcattcaat ttcttatgac taatgaggaa acagtagata 901 aagctccacc tcattctaaa ataggtctag aaaaaaaaag aaagcgaaaa atggatgtaa 961 gcaagataac tcgttatacc gaggattgct ttagtgattc taattgtgta cccaataaat 1021 caaaaatgca agaagtagac tttctagaac aaaatgaaga gctacaagca gtagactcac 1081 agaaatatgc attatcaaaa gtgaagcctg aatcaactga tgaagactta gaatctgtgg 1141 atgccttcca acatctaatt tataacccag ataagtgtgg agaagagagt tcacctgttc 1201 atactagcac ttttctttca aataccttaa aaaagaaatg tgaagagagt gattctgagt 1261 cacctgctac tttcagtacc gaagagccat cattctaccc ctgtacaaag tgcaatgtga 1321 attttaggga gaagaagcac ctccacaggc atatgatgta tcatttagat gggaatagtc 1381 actttcgcca tcttaatgtc ccaaggccat atgcttgtag agaatgtgga cggacatttc 1441 gagatcgcaa ttcacttcta aaacatatga ttattcacca ggagagaaga cagaagttga 1501 tggaggaaat tcgtgaattg aaagaacttc aggatgaagg aagaagtgca cgattacagt 1561 gtcctcagtg tgtgtttggt accaattgcc ctaaaacatt tgtgcaacat gctaaaaccc 1621 atgaaaaaga taaaaggtac tactgctgtg aagagtgtaa cttcatggca gtgacagaaa 1681 atgaattgga atgccatcga ggcattgcac atggggcagt ggtaaaatgc cctatggtca 1741 cttctgatat tgcccagaga aaaacacaaa aaaagacttt catgaaagac tctgtagtag 1801 gatcatccaa aaaatcagct acctacatat gtaagatgtg tccttttact acttcagcca 1861 aaagtgtttt aaaaaagcac acggagtact tgcattcatc atcatgtgtt gattcatttg 1921 gtagtcctct tggacttgat aaaagaaaaa atgacatcct tgaagaacct gtagatagtg 1981 atagcactaa aacattaact aaacaacagt caaccacatt tccaaagaac tctgctttaa 2041 aacaagatgt gaagcgaaca tttggatcaa cctcaaaatc aagtagtttt tcaaaaattc 2101 ataagcggcc acacagaata cagaaagctc ggaaaagcat tgcccaatca ggtgtaaaca 2161 tgtgcaatca aaacagctct cctcataaga atgttacaat taaaagcagc gttgaccaaa 2221 aacctaagta tttccatcaa gcagcaaaag aaaagtctaa tgccaaggca aatagccact 2281 atttgtatag acacaaatat gaaaactata ggatgatcaa aaaatcaggt gaatcatatc 2341 ctgtgcattt caaaaaagaa gaagctagtt cattaaattc tttacacctg ttttcatcat 2401 caagtaattc tcacaacaat tttatttcag accctcataa gcctgacgcc aaaaggcctg 2461 aaagcttcaa agatcacaga cgtgtagctg taaagagagt aattaaggaa tctaagaagg 2521 aaagttctgt tggaggggaa gacttggata gctatccaga ttttttgcat aaaatgactg 2581 ttgtcgtttt gcaaaaactt aattctgctg aaaagaaaga tagttatgaa acagaagatg 2641 aaagttcctg ggataatgtt gagttaggag actacactac acaggccata gaagatgaaa 2701 cctatagtga tattaatcaa gagcatgtaa atttattccc tttatttaag agcaaagtgg 2761 aaggtcagga gcctggagaa aatgctactc ttagttatga ccaaaacgat ggcttttatt 2821 ttgaatacta tgaagatact ggaagtaaca actttttgca tgagatacat gatcctcagc 2881 atttagaaac tgcagatgct tcattgtcaa agcatagttc tgtttttcat tggactgatt 2941 tgtctcttga gaagaaatcg tgtccttact gcccagcaac atttgaaaca ggtgttgggt 3001 tatcaaatca tgtcaggggg catcttcaca gagcaggatt aagctatgaa gcccgtcatg 3061 ttgtatcacc agaacaaata gccacaagtg acaaaatgca gcatttcaaa agaactggca 3121 caggaacacc tgttaaacga gttagaaaag ctatagagaa gtctgaaacc acttctgaac 3181 acacttgtca gctctgtggt ggttggtttg atactaaaat tggattatca aatcatgtta 3241 gaggccactt gaaaagactt ggaaagacga aatgggatgc tcacaaatct ccaatctgtg 3301 ttctgaatga gatgatgcaa aatgaagaaa aatatgaaaa aatcttaaag gcattgaaca 3361 gtcgtcgtat tattcccaga ccatttgtag ctcaaaaact tgcatcaagt gatgacttta 3421 tatctcaaaa tgttatacct cttgaagcat accgtaatgg cctaaagact gaagctctgt 3481 cagtgtctgc atcagaagaa gaagggctga atttcttaaa tgaatatgat gaaacaaaac 3541 cagaactgcc cagtgggaaa aagaatcagt ctcttacact catagaactt cttaaaaata 3601 aaaggatggg agaagaaagg aattctgcta tttctcctca aaagatccat aatcagacag 3661 caagaaagag attcgttcag aaatgcgttc ttccattaaa tgaggatagt ccgttgatgt 3721 atcagccaca aaaaatggac ttgactatgc actcagcctt agattgtaag caaaagaaat 3781 caaggtcaag atctggaagc aagaagaaaa tgctaacatt acctcatggt gctgacgagg 3841 tttacattct ccgatgcagg ttttgtggcc tagtctttcg aggacccttg tctgttcagg 3901 aagactggat taagcactta caacgacata ttgtaaacgc taatcttcca cggactggag 3961 ctggcatggt ggaagtcacg tcactactta aaaagcctgc ctccattaca gaaacttcat 4021 tttctctact aatggccgaa gcagcttcat tgccaacttt cttgtacaaa gtggttggta 4081 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 4141 ggtggcgcgt taagtcgaca atcaacctct ggatta