Transcript: Human XM_011542261.3

PREDICTED: Homo sapiens zinc finger protein 644 (ZNF644), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF644 (84146)
Length:
5714
CDS:
219..4325

Additional Resources:

NCBI RefSeq record:
XM_011542261.3
NBCI Gene record:
ZNF644 (84146)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542261.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430068 ACAGACTTATTGGACAATTAT pLKO_005 4626 3UTR 100% 15.000 21.000 N ZNF644 n/a
2 TRCN0000145032 GACTGGATTAAGCACTTACAA pLKO.1 4176 CDS 100% 5.625 7.875 N ZNF644 n/a
3 TRCN0000414524 TCTCTACTAATGGCCGAAGCA pLKO_005 4296 CDS 100% 2.640 3.696 N ZNF644 n/a
4 TRCN0000140402 GACGAGGTTTACATTCTCCGA pLKO.1 4107 CDS 100% 0.660 0.924 N ZNF644 n/a
5 TRCN0000121698 CCAGTTTGAATTGGATGTAAA pLKO.1 4348 3UTR 100% 13.200 9.240 N ZNF644 n/a
6 TRCN0000145205 GAAGTCACGTCACTACTTAAA pLKO.1 4245 CDS 100% 13.200 9.240 N ZNF644 n/a
7 TRCN0000436099 TCCATTACAGAAACTTCATTT pLKO_005 4275 CDS 100% 13.200 9.240 N ZNF644 n/a
8 TRCN0000140261 GTGCTGACGAGGTTTACATTC pLKO.1 4102 CDS 100% 10.800 7.560 N ZNF644 n/a
9 TRCN0000412911 ATGCTAACATTACCTCATGGT pLKO_005 4083 CDS 100% 2.640 1.848 N ZNF644 n/a
10 TRCN0000140054 CAAGGTCAAGATCTGGAAGCA pLKO.1 4054 CDS 100% 2.640 1.848 N ZNF644 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542261.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09151 pDONR223 100% 96.9% 96.9% None 2008C>A;3686_3808del n/a
2 ccsbBroad304_09151 pLX_304 0% 96.9% 96.9% V5 2008C>A;3686_3808del n/a
3 TRCN0000475663 TTTATGCATGAGACAATACTCATG pLX_317 7.9% 96.9% 96.9% V5 2008C>A;3686_3808del n/a
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