Construct: ORF ccsbBroad304_09330

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010729.1_s304c1, BRDN0000403836
Derived from:
ccsbBroadEn_09330
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTDH (92140)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09330
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92140 MTDH metadherin NM_178812.4 99.8% 99.6% 232G>T;949A>G
2 human 92140 MTDH metadherin NM_001363136.1 96.1% 95.8% 232G>T;744_745ins66;883A>G
3 human 92140 MTDH metadherin NM_001363137.1 94.9% 94.7% 232G>T;949A>G;1047_1136del
4 human 92140 MTDH metadherin NM_001363138.1 94.2% 93.8% 232G>T;949A>G;1048_1049ins99
5 human 92140 MTDH metadherin XM_011517370.3 91.8% 91.5% 232G>T;949A>G;1377_1378ins141
6 human 92140 MTDH metadherin XM_011517368.2 91.3% 91.1% (many diffs)
7 human 92140 MTDH metadherin NM_001363139.1 90.4% 90% (many diffs)
8 human 92140 MTDH metadherin XM_011517369.3 87.3% 87% (many diffs)
9 human 92140 MTDH metadherin XM_017013968.2 86.1% 85.7% (many diffs)
10 mouse 67154 Mtdh metadherin NM_026002.4 90.2% 90.7% (many diffs)
11 mouse 67154 Mtdh metadherin XM_006520148.1 85.8% 86.2% (many diffs)
12 mouse 67154 Mtdh metadherin XM_006520150.1 84.7% 84.8% (many diffs)
13 mouse 67154 Mtdh metadherin XM_017316729.1 80.9% 80.2% (many diffs)
14 mouse 67154 Mtdh metadherin XM_017316728.1 80.4% 80.7% (many diffs)
15 mouse 67154 Mtdh metadherin XM_006520151.1 76.9% 76.3% (many diffs)
16 mouse 67154 Mtdh metadherin XM_006520149.1 76.4% 76.7% (many diffs)
17 mouse 67154 Mtdh metadherin XM_006520152.1 75.3% 74.3% (many diffs)
18 mouse 67154 Mtdh metadherin XM_017316730.1 74.8% 74.9% (many diffs)
19 mouse 67154 Mtdh metadherin XM_017316731.1 67.5% 66.8% (many diffs)
20 mouse 67154 Mtdh metadherin XM_006520153.3 49.8% 48.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1812
ORF length:
1746
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgcacggagc tggcaggacg agctggccca gcaggccgag gagggctcgg
121cccggctgcg ggaaatgctc tcggtcggcc taggctttct gcgcaccgag ctgggcctcg
181acctggggct ggagccgaaa cggtaccccg gctgggtgat cctggtgggc actggcgcgc
241tcgggctgct gctgctgttt ctgctgggct acggctgggc cgcggcttgc gccggctccc
301gcaaaaagcg gaggagcccg ccccgcaagc gggaggaggc ggcggccgtg ccggccgcgg
361cccccgacga cctggccttg ctgaagaatc tccggagcga ggaacagaag aagaagaacc
421ggaagaaact gtccgagaag cccaaaccaa atgggcggac tgttgaagtg gctgagggtg
481aagctgttcg aacacctcaa agtgtaacag caaagcagcc accagagatt gacaagaaaa
541atgaaaagtc aaagaaaaat aagaagaaat caaagtcaga tgctaaagca gtgcaaaaca
601gttcacgcca tgatggaaag gaagttgatg aaggagcctg ggaaactaaa attagtcaca
661gagagaaacg acagcagcgt aaacgtgata aggtgctgac tgattctggt tcattggatt
721caactatccc tgggatagaa aataccatca cagttaccac cgagcaactt acaaccgcat
781catttcctgt tggttccaag aagaataaag gtgattctca tctaaatgtt caagttagca
841actttaaatc tggaaaagga gattctacac ttcaggtttc ttcaggattg aatgaaaacc
901tcactgtcaa tggaggaggc tggaatgaaa agtctgtaaa actctcctca cagatcagtg
961caggtgagga gaagtggaac tccgtttcac ctgcttctgc aggaaagagg aaagctgagc
1021catctgcctg gagtcaagac actggagatg ctaatacaaa tggaaaagac tggggaagga
1081gttggagtga ccgttcaata ttttctggca ttgggtctac tgctgagcca gtttctcagt
1141ctaccacttc tgattatcag tgggatgtta gccgtaatca accctatatc gatgatgaat
1201ggtctgggtt aaatggtctg tcttctgctg atcccaactc tgattggaat gcaccagcag
1261aagagtgggg caattgggta gacgaagaaa gagcttcact tctaaagtcc caggaaccaa
1321ttcctgatga tcaaaaggtc tcagatgatg ataaagaaaa gggagaggga gctcttccaa
1381ctgggaaatc caaaaagaaa aaaaagaaaa agaagaagca aggtgaagat aactctactg
1441cacaggacac agaagaatta gaaaaagaga ttagagaaga ccttccagtg aatacctcta
1501aaacccgtcc aaaacaggaa aaagcttttt ccttgaagac cataagcact agtgatccag
1561ccgaagtact cgtcaaaaat agccagccta tcaagactct tccacctgct acttctaccg
1621agccatctgt aatcttatca aaaagtgatt ctgacaagag ctcttcccaa gtgccgccaa
1681tactacaaga gacagataaa tccaagtcaa ataccaagca aaatagtgtg cctccttcac
1741agaccaagtc tgaaactagc tgggaatctc ccaaacaaat aaaaaagaag aaaaaagcca
1801gacgagaaac gtgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1861tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1921caatcaacct ctggatta

Download FASTA (ORF) (Full)