Construct: ORF ccsbBroad304_09391
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008321.1_s304c1, BRDN0000402477
- Derived from:
- ccsbBroadEn_09391
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DTX2 (113878)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09391
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | NM_001102594.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
2 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | NM_001102595.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
3 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | NM_020892.2 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
4 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_005250131.2 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
5 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_005250132.2 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
6 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_011515772.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
7 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_011515773.2 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
8 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_011515774.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
9 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_011515775.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
10 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011723.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
11 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011724.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
12 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011725.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
13 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_024446649.1 | 99.8% | 99.8% | 438C>G;504C>T;1151G>A |
14 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | NM_001102596.2 | 92.3% | 92.4% | 438C>G;504C>T;1010_1011ins141 |
15 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011726.2 | 92.3% | 92.4% | 438C>G;504C>T;1010_1011ins141 |
16 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011727.1 | 92.3% | 92.4% | 438C>G;504C>T;1010_1011ins141 |
17 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_024446650.1 | 92.3% | 92.4% | 438C>G;504C>T;1010_1011ins141 |
18 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_024446651.1 | 91.1% | 91.1% | (many diffs) |
19 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011729.2 | 66.5% | 66% | (many diffs) |
20 | human | 113878 | DTX2 | deltex E3 ubiquitin ligase 2 | XM_017011730.2 | 66.1% | 66% | (many diffs) |
21 | human | 441263 | DTX2P1-UPK3BP1-PMS2P11 | DTX2P1-UPK3BP1-PMS2P11 read... | NR_023383.1 | 38.9% | (many diffs) | |
22 | mouse | 74198 | Dtx2 | deltex 2, E3 ubiquitin ligase | NM_001256096.1 | 83.8% | 84.9% | (many diffs) |
23 | mouse | 74198 | Dtx2 | deltex 2, E3 ubiquitin ligase | XM_006504506.3 | 83.8% | 84.9% | (many diffs) |
24 | mouse | 74198 | Dtx2 | deltex 2, E3 ubiquitin ligase | XM_006504507.2 | 83.8% | 84.9% | (many diffs) |
25 | mouse | 74198 | Dtx2 | deltex 2, E3 ubiquitin ligase | XM_006504508.1 | 83.8% | 84.9% | (many diffs) |
26 | mouse | 74198 | Dtx2 | deltex 2, E3 ubiquitin ligase | NM_023742.2 | 83.6% | 84.7% | (many diffs) |
27 | mouse | 74198 | Dtx2 | deltex 2, E3 ubiquitin ligase | XM_006504510.3 | 44.4% | 46% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1932
- ORF length:
- 1866
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc catggcccca agcccttccc tggtgcaggt gtacaccagc cccgcggctg 121 tggccgtgtg ggaatggcag gacgggctgg gcacctggca cccctacagt gccaccgtct 181 gcagcttcat cgagcagcag tttgtccagc agaagggcca acgttttggg cttgggagcc 241 tggcccacag catccccttg ggccaggcag acccctcgct ggccccttac attattgacc 301 tccccagctg gacccagttc cgccaggaca ccggcaccat gcgggctgtg cggagacacc 361 tgttccccca gcactcagcc cctggccgag gtgtcgtctg ggagtggctg agcgacgatg 421 gctcctggac tgcctatgaa gccagcgtct gtgactatct ggagcagcag gtggccaggg 481 gcaaccagct cgtggacttg gcgcccctgg ggtacaacta cactgtcaac tacaccaccc 541 acacgcagac caacaagact tccagctttt gccgcagcgt gcggcgccaa gcagggccgc 601 cttacccggt gaccaccatc atcgctccgc cgggccacac aggcgtcgcc tgctcttgcc 661 accagtgcct cagtggcagc agaactggcc ccgtgtcagg ccgctaccgc cactccatga 721 ccaacctccc tgcatacccc gtcccccagc accccccaca caggaccgct tctgtgtttg 781 ggacccacca ggcctttgca ccgtacaaca aaccctcact ctccggggcc cggtctgcgc 841 ccaggctgaa caccaccaac gcctggggcg cagctcctcc ttccctgggg agccagcccc 901 tctaccgctc cagcctctcc cacctgggac cgcagcacct gcccccagga tcctccacct 961 ccggtgcagt cagtgcctcc ctccccagcg gtccctcaag cagcccaggg agcgtccctg 1021 ccactgtgcc catgcagatg ccaaagccca gcagagtcca gcaggcgctc gcaggcatga 1081 cgagtgttct gatgtcagcc attggactcc ctgtgtgtct tagccgcgca ccccagccca 1141 ccagccctcc cgcctcccgt ctggcttcca aaagtcacgg ctcagttaag agattgagga 1201 aaatgtccgt gaaagaagcg accccgaagc cagagccaga gccagagcag gtcataaaaa 1261 actacacgga agagctgaaa gtgcccccag atgaggactg catcatctgc atggagaagc 1321 tgtccacagc gtctggatac agcgatgtga ctgacagcaa ggcaatcggg tccctagctg 1381 tgggccacct caccaagtgc agccatgcct tccacctgct gtgcctcctg gccatgtact 1441 gcaacggcaa taaggatgga agtctgcagt gtccctcctg caaaaccatc tatggagaga 1501 agacggggac ccagccccag ggaaagatgg aggtattacg gttccagatg tcgctccccg 1561 gccacgagga ctgcgggacc atcctcatag tttacagcat tccccatggt atccagggcc 1621 ctgagcaccc caatcccgga aagccgttca ctgccagagg gtttccccgc cagtgctacc 1681 ttccagacaa cgcccagggc cgcaaggtcc tagagctcct gaaggtggcc tggaagaggc 1741 ggctcatctt cacagtgggc acgtccagca ccacgggtga gacggacacc gtggtatgga 1801 acgagatcca ccacaagaca gagatggacc gcaacattac gggccacggc tatcccgacc 1861 ccaactacct gcagaacgtg ctggctgagc tggctgccca gggggtgacc gaggactgcc 1921 tggagcagca gtgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 1981 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 2041 caatcaacct ctggatta