Construct: ORF ccsbBroad304_09548
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006597.1_s304c1, BRDN0000462353
- Derived from:
- ccsbBroadEn_09548
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PPARGC1B (133522)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09548
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | NM_133263.4 | 99.9% | .4% | 2_3insG |
| 2 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | XM_005268372.4 | 97.4% | .4% | (many diffs) |
| 3 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | NM_001172698.2 | 96.1% | .5% | 2_3insG;464_465ins117 |
| 4 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | XM_011537553.2 | 95% | .4% | (many diffs) |
| 5 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | NM_001172699.1 | 93.6% | .5% | 0_1ins77;2delT;389_390ins117 |
| 6 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | XM_011537554.2 | 92.5% | .4% | (many diffs) |
| 7 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | XM_011537555.2 | 91.3% | .4% | (many diffs) |
| 8 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | XM_011537556.2 | 80% | .6% | 0_1ins613 |
| 9 | human | 133522 | PPARGC1B | PPARG coactivator 1 beta | XM_011537557.1 | 56.7% | 1.2% | 2_3insG;1703_1704ins37;1743_1744ins1289 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 138
- ORF length:
- 69
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gggcggggaa cgactgcggc gcgctgctgg acgaagagct ctcctccttc 121 ttcctcaact atctcgctga cacgcagggt ggagggtccg gggaggagca actctatgct 181 gactttccag aacttgacct ctcccagctg gatgccagcg actttgactc ggccacctgc 241 tttggggagc tgcagtggtg cccagagaac tcagagactg aacccaacca gtacagcccc 301 gatgactccg agctcttcca gattgacagt gagaatgagg ccctcctggc agagctcacc 361 aagaccctgg atgacatccc tgaagatgac gtgggtctgg ctgccttccc agccctggat 421 ggtggagacg ctctatcatg cacctcagct tcgcctgccc cctcatctgc accccccagc 481 cctgccccgg agaagccctc ggccccagcc cctgaggtgg acgagctctc actgctgcag 541 aagctcctcc tggccacatc ctacccaaca tcaagctctg acacccagaa ggaagggacc 601 gcctggcgcc aggcaggcct cagatctaaa agtcaacggc cttgtgttaa ggcggacagc 661 acccaagaca agaaggctcc catgatgcag tctcagagcc gaagttgtac agaactacat 721 aagcacctca cctcggcaca gtgctgcctg caggatcggg gtctgcagcc accatgcctc 781 cagagtcccc ggctccctgc caaggaggac aaggagccgg gtgaggactg cccgagcccc 841 cagccagctc cagcctctcc ccgggactcc ctagctctgg gcagggcaga ccccggtgcc 901 ccggtttccc aggaagacat gcaggcgatg gtgcaactca tacgctacat gcacacctac 961 tgcctccccc agaggaagct gcccccacag acccctgagc cactccccaa ggcctgcagc 1021 aacccctccc agcaggtcag atcccggccc tggtcccggc accactccaa agcctcctgg 1081 gctgagttct ccattctgag ggaacttctg gctcaagacg tgctctgtga tgtcagcaaa 1141 ccctaccgtc tggccacgcc tgtttatgcc tccctcacac ctcggtcaag gcccaggccc 1201 cccaaagaca gtcaggcctc ccctggtcgc ccgtcctcgg tggaggaggt aaggatcgca 1261 gcttcaccca agagcaccgg gcccagacca agcctgcgcc cactgcggct ggaggtgaaa 1321 agggaggtcc gccggcctgc cagactgcag cagcaggagg aggaagacga ggaagaagag 1381 gaggaggaag aggaagaaga aaaagaggag gaggaggagt ggggcaggaa aaggccaggc 1441 cgaggcctgc catggacgaa gctggggagg aagctggaga gctctgtgtg ccccgtgcgg 1501 cgttctcgga gactgaaccc tgagctgggc ccctggctga catttgcaga tgagccgctg 1561 gtcccctcgg agccccaagg tgctctgccc tcactgtgcc tggctcccaa ggcctacgac 1621 gtagagcggg agctgggcag ccccacggac gaggacagtg gccaagacca gcagctccta 1681 cggggacccc agatccctgc cctggagagc ccctgtgaga gtgggtgtgg ggacatggat 1741 gaggacccca gctgcccgca gctccctccc agagactctc ccaggtgcct catgctggcc 1801 ttgtcacaaa gcgacccaac ttttggcaag aagagctttg agcagacctt gacagtggag 1861 ctctgtggca cagcaggact caccccaccc accacaccac cgtacaagcc cacagaggag 1921 gatcccttca aaccagacat caagcatagt ctaggcaaag aaatagctct cagcctcccc 1981 tcccctgagg gcctctcact caaggccacc ccaggggctg cccacaagct gccaaagaag 2041 cacccagagc gaagtgagct cctgtcccac ctgcgacatg ccacagccca gccagcctcc 2101 caggctggcc agaagcgtcc cttctcctgt tcctttggag accatgacta ctgccaggtg 2161 ctccgaccag aaggcgtcct gcaaaggaag gtgctgaggt cctgggagcc gtctggggtt 2221 caccttgagg actggcccca gcagggtgcc ccttgggctg aggcacaggc ccctggcagg 2281 gaggaagaca gaagctgtga tgctggcgcc ccacccaagg acagcacgct gctgagagac 2341 catgagatcc gtgccagcct caccaaacac tttgggctgc tggagaccgc cctggaggag 2401 gaagacctgg cctcctgcaa gagccctgag tatgacactg tctttgaaga cagcagcagc 2461 agcagcggcg agagcagctt cctcccagag gaggaagagg aagaagggga ggaggaggag 2521 gaggacgatg aagaagagga ctcaggggtc agccccactt gctctgacca ctgcccctac 2581 cagagcccac caagcaaggc caaccggcag ctctgttccc gcagccgctc aagctctggc 2641 tcttcaccct gccactcctg gtcaccagcc actcgaagga acttcagatg tgagagcaga 2701 gggccgtgtt cagacagaac gccaagcatc cggcacgcca ggaagcggcg ggaaaaggcc 2761 attggggaag gccgcgtggt gtacattcaa aatctctcca gcgacatgag ctcccgagag 2821 ctgaagaggc gctttgaagt gtttggtgag attgaggagt gcgaggtgct gacaagaaat 2881 aggagaggcg agaagtacgg cttcatcacc taccggtgtt ctgagcacgc ggccctctct 2941 ttgacaaagg gcgctgccct gaggaagcgc aacgagccct ccttccagct gagctacgga 3001 gggctccggc acttctgctg gcccagatac actgactacg attccaattc agaagaggcc 3061 cttcctgcgt cagggaaaag caagtatgaa gccatggatt ttgacagctt actgaaagag 3121 gcccagcaga gcctgcattt gccaactttc ttgtacaaag tggttggtaa gcctatccct 3181 aaccctctcc tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt 3241 aagtcgacaa tcaacctctg gatta