Construct: ORF ccsbBroad304_09693
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008234.1_s304c1, BRDN0000411813
- Derived from:
- ccsbBroadEn_09693
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC38A9 (153129)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09693
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001349382.1 | 99.8% | 99.8% | 531G>A;545G>C;609T>C |
| 2 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001349383.1 | 99.8% | 99.8% | 531G>A;545G>C;609T>C |
| 3 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001349384.1 | 99.8% | 99.8% | 531G>A;545G>C;609T>C |
| 4 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_173514.4 | 99.8% | 99.8% | 531G>A;545G>C;609T>C |
| 5 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_006714539.3 | 99.8% | 99.8% | 531G>A;545G>C;609T>C |
| 6 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543174.1 | 99.8% | 99.8% | 531G>A;545G>C;609T>C |
| 7 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543176.1 | 94.4% | 94.4% | (many diffs) |
| 8 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_017009077.1 | 94.4% | 94.4% | (many diffs) |
| 9 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543177.1 | 93.4% | 93.4% | (many diffs) |
| 10 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_024454369.1 | 93.4% | 93.4% | (many diffs) |
| 11 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543178.1 | 89.8% | 89.6% | 526_527ins171 |
| 12 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_017009078.2 | 89.8% | 89.6% | 526_527ins171 |
| 13 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001258286.1 | 88.5% | 88.5% | (many diffs) |
| 14 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001349385.1 | 88.2% | 88.2% | (many diffs) |
| 15 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_017009080.1 | 88.2% | 88.2% | (many diffs) |
| 16 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001258287.1 | 87.8% | 87.1% | (many diffs) |
| 17 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_017009081.1 | 82.8% | 82.8% | (many diffs) |
| 18 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543180.1 | 81.8% | 81.8% | (many diffs) |
| 19 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_017009082.1 | 81.8% | 81.8% | (many diffs) |
| 20 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543182.1 | 80.9% | 76.8% | (many diffs) |
| 21 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543183.1 | 78.2% | 78% | 526_527ins171;585_586ins195 |
| 22 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NM_001282429.1 | 77.7% | 77.7% | (many diffs) |
| 23 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XM_011543184.1 | 71.8% | 71.6% | 526_527ins171;585_586ins303 |
| 24 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NR_146165.1 | 64% | (many diffs) | |
| 25 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XR_948237.2 | 61.8% | (many diffs) | |
| 26 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XR_001742002.1 | 58.8% | (many diffs) | |
| 27 | human | 153129 | SLC38A9 | solute carrier family 38 me... | XR_948238.1 | 57.6% | (many diffs) | |
| 28 | human | 153129 | SLC38A9 | solute carrier family 38 me... | NR_047649.1 | 56% | (many diffs) | |
| 29 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | NM_178746.4 | 89% | 91.4% | (many diffs) |
| 30 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XM_006517670.2 | 89% | 91.4% | (many diffs) |
| 31 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XM_006517671.3 | 86.4% | 87.7% | (many diffs) |
| 32 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XM_006517672.2 | 86.4% | 87.7% | (many diffs) |
| 33 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XM_006517673.3 | 79.8% | 82.7% | (many diffs) |
| 34 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XM_006517675.3 | 79.8% | 82.7% | (many diffs) |
| 35 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XM_017315519.1 | 79.8% | 82.7% | (many diffs) |
| 36 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XR_873763.2 | 22% | (many diffs) | |
| 37 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XR_873764.2 | 17.2% | (many diffs) | |
| 38 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XR_873762.2 | 17.1% | (many diffs) | |
| 39 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XR_001780783.1 | 16.7% | (many diffs) | |
| 40 | mouse | 268706 | Slc38a9 | solute carrier family 38, m... | XR_382737.3 | 15.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1752
- ORF length:
- 1683
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcaaatatg aatagtgatt ctaggcatct tggcacctct gaggtagatc 121 atgaaagaga tcctggacct atgaatatcc agtttgagcc atcggatcta agatccaaaa 181 ggcctttctg tatagagccc acaaacatcg tgaatgtgaa tcatgtcatt cagagggtta 241 gtgaccatgc ctctgccatg aacaagagaa ttcattacta cagccggctc accactcctg 301 cagacaaggc actgattgcc ccagaccatg tagttccagc tccagaagag tgctatgtgt 361 atagtccatt gggctctgct tataaacttc aaagttacac tgaaggatac ggtaaaaaca 421 ccagtttagt aaccattttt atgatttgga ataccatgat gggaacatct atactaagca 481 ttccttgggg cataaaacag gctggattta ctactggaat gtgtgtcatc atactgatgg 541 gccttttaac actttattgc tgctacagag tagtgaaatc acggactatg atgttttcat 601 tggataccac tacctgggaa tatccagatg tctgcagaca ttatttcggc tcctttgggc 661 agtggtcgag tctcctcttc tccttggtgt ctctcattgg agcaatgata gtttattggg 721 tgcttatgtc aaattttctt tttaatactg gaaagtttat ttttaatttt attcatcaca 781 ttaatgacac agacactata ctgagtacca ataatagcaa ccctgtgatt tgtccaagtg 841 ccgggagtgg aggccatcct gacaacagct ctatgatttt ctatgccaat gacacaggag 901 cccaacagtt tgaaaagtgg tgggataagt ccaggacagt ccccttttat cttgtagggc 961 tcctcctccc actgctcaat ttcaagtctc cttcattttt ttcaaaattt aatatcctag 1021 gcacagtgtc tgtcctttat ttgattttcc ttgtcacctt taaggctgtt cgcttgggat 1081 ttcatttgga atttcattgg tttataccaa cagaattttt tgtaccagag ataagatttc 1141 agtttccaca gctgactgga gtgcttaccc ttgctttttt tattcataat tgtatcatca 1201 cactcttgaa gaacaacaag aaacaagaaa acaatgtgag ggacttgtgc attgcttata 1261 tgctggtgac attaacttat ctctatattg gagtcctggt ttttgcttca tttccttcac 1321 caccattatc caaagattgt attgagcaga attttttaga caacttccct agcagtgaca 1381 ccctgtcctt cattgcaagg atattcctgc tgttccagat gatgactgta tacccactct 1441 taggctacct ggctcgtgtc cagcttttgg gccatatctt cggtgacatt tatcctagca 1501 ttttccatgt gctgattctt aatctaatta ttgtgggagc tggagtgatc atggcctgtt 1561 tctacccaaa cataggaggg atcataagat attcaggagc agcatgtgga ctggcctttg 1621 tattcatata cccatctctc atctatataa tttccctcca ccaagaagag cgtctgacat 1681 ggcctaaatt aatcttccac gttttcatca tcattttggg cgtggctaac ctgattgttc 1741 agttttttat gttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 1801 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 1861 caatcaacct ctggatta