Construct: ORF ccsbBroad304_09727

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016130.1_s304c1, BRDN0000411122
Derived from:
ccsbBroadEn_09727
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CXorf38 (159013)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09727
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 159013 CXorf38 chromosome X open reading f... NM_144970.3 99.8% 100% 76T>C
2 human 159013 CXorf38 chromosome X open reading f... XM_005272589.3 99.8% 100% 76T>C
3 human 159013 CXorf38 chromosome X open reading f... XM_006724528.2 85.7% 85.8% 76T>C;214_215ins135
4 human 159013 CXorf38 chromosome X open reading f... XM_017029303.1 85.7% 85.8% 76T>C;214_215ins135
5 human 159013 CXorf38 chromosome X open reading f... XM_006724527.4 81% 81.1% 76T>C;619_620ins180
6 human 159013 CXorf38 chromosome X open reading f... XM_017029302.1 75.3% 75.4% 1_153del;229T>C;502_503ins120
7 human 159013 CXorf38 chromosome X open reading f... NM_001330455.2 62.6% 62.6% 0_1ins357
8 human 159013 CXorf38 chromosome X open reading f... XM_017029304.1 62.6% 62.6% 0_1ins357
9 mouse 69155 1810030O07Rik RIKEN cDNA 1810030O07 gene NM_175141.6 85.7% 86.2% (many diffs)
10 mouse 69155 1810030O07Rik RIKEN cDNA 1810030O07 gene XM_006527698.3 85.7% 86.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1023
ORF length:
957
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt gctgtcggag ctagcggcgc gcctcaactg cgccgagtac aagaactggg
121tgaaggcggg ccactgcctg ctactgctgc gcagctgcct gcagggtttc gtcggccgcg
181aggtgctctc cttccaccgc ggcctactcg ccgcagcccc cggcctgggg ccccgcgccg
241tctgccgcgg cggctcacgg tgcagccctc gcgcccgcca gtttcagcct cagtgtcagg
301tgtgcgctga atggaaaagg gagattttga gacatcatgt caacagaaat ggagatgtgc
361actggggaaa ctgccggccg ggccgctggc ccgtggacgc ctgggaggtg gccaaggcct
421tcatgccccg aggactagca gacaaacaag gacctgagga atgtgatgca gttgctcttt
481taagtctcat caactcctgc gatcacttcg tggttgatcg aaagaaagtc acagaggtaa
541ttaaatgtcg taatgagatc atgcactctt cagagatgaa agtatcttct acgtggcttc
601gagattttca gatgaagatc caaaattttc tgaatgaatt caagaacatc ccagagattg
661tggcagtata ctccagaata gaacagctgt tgacgtctga ctgggctgtt cacatccccg
721aggaagatca gcgagatggg tgtgaatgtg aaatgggaac ttacctgagt gagagccaag
781tcaatgaaat agaaatgcag ttactaaagg agaaacttca agagatatat cttcaagcag
841aagaacaaga ggtgttgcct gaagagctct caaatcgact ggaagtggtg aaggaatttc
901tgagaaacaa tgaggatctt agaaatggcc ttacagaaga tatgcagaag ctagacagcc
961tctgtctaca tcaaaaactg gattcacagg aacctgggag acaaacacct gacaggaagg
1021cctgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1081tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1141tctggatta

Download FASTA (ORF) (Full)