Transcript: Human XM_005272589.3

PREDICTED: Homo sapiens chromosome X open reading frame 38 (CXorf38), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CXorf38 (159013)
Length:
2746
CDS:
130..1089

Additional Resources:

NCBI RefSeq record:
XM_005272589.3
NBCI Gene record:
CXorf38 (159013)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005272589.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140216 GCTCTCAAATCGACTGGAAGT pLKO.1 930 CDS 100% 4.050 5.670 N CXorf38 n/a
2 TRCN0000145117 GCAGTATACTCCAGAATAGAA pLKO.1 727 CDS 100% 5.625 3.938 N CXorf38 n/a
3 TRCN0000144242 CTGAGAAACAATGAGGATCTT pLKO.1 964 CDS 100% 4.950 3.465 N CXorf38 n/a
4 TRCN0000144739 GTAATGAGATCATGCACTCTT pLKO.1 614 CDS 100% 4.950 3.465 N CXorf38 n/a
5 TRCN0000144915 GTGAATGTGAAATGGGAACTT pLKO.1 806 CDS 100% 4.950 3.465 N CXorf38 n/a
6 TRCN0000139242 CCTGAGGAATGTGATGCAGTT pLKO.1 517 CDS 100% 4.050 2.835 N CXorf38 n/a
7 TRCN0000143356 GAATGTGATGCAGTTGCTCTT pLKO.1 523 CDS 100% 4.050 2.835 N CXorf38 n/a
8 TRCN0000143560 GAGGATCTTAGAAATGGCCTT pLKO.1 976 CDS 100% 2.160 1.512 N CXorf38 n/a
9 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2196 3UTR 100% 4.950 2.475 Y ERAP2 n/a
10 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2197 3UTR 100% 13.200 6.600 Y LIAS n/a
11 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 2363 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005272589.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09727 pDONR223 100% 99.8% 100% None 76T>C n/a
2 ccsbBroad304_09727 pLX_304 0% 99.8% 100% V5 76T>C n/a
3 TRCN0000471798 CCAAAAGGATCGACAGTAAGCTCC pLX_317 41.2% 99.8% 100% V5 76T>C n/a
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