Construct: ORF ccsbBroad304_09742

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008278.1_s304c1, BRDN0000461432
Derived from:
ccsbBroadEn_09742
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC16A11 (162515)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09742
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 162515 SLC16A11 solute carrier family 16 me... NM_001370549.1 94.8% 94.9% 0_1ins72;207C>T
2 human 162515 SLC16A11 solute carrier family 16 me... NM_153357.3 94.8% 94.9% 0_1ins72;207C>T
3 human 162515 SLC16A11 solute carrier family 16 me... NM_001370553.1 80.8% 79.8% (many diffs)
4 human 162515 SLC16A11 solute carrier family 16 me... XM_017024282.2 36.8% 34.5% (many diffs)
5 mouse 216867 Slc16a11 solute carrier family 16 (m... NM_153081.3 79.9% 83% (many diffs)
6 mouse 216867 Slc16a11 solute carrier family 16 (m... XM_006532916.2 79.9% 83% (many diffs)
7 mouse 216867 Slc16a11 solute carrier family 16 (m... XM_011248924.2 79.9% 83% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1482
ORF length:
1413
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gccagctccc cagcggaagc acaggcgtgg aggcttctct cacagatgtt
121tccccacccc gcagacggcg atgacccccc agcccgccgg acccccggat gggggctggg
181gctgggtggt ggcggccgca gccttcgcga taaacgggct gtcctacggg ctgctgcgct
241cgctgggcct tgccttccct gaccttgccg agcactttga ccgaagcgcc caggacactg
301cgtggatcag cgccctggcc ctggccgtgc agcaggcagc cagccctgtg ggcagcgccc
361tgagcacgcg ctggggggcc cgccccgtgg tgatggttgg gggcgtcctc gcctcgctgg
421gcttcgtctt ctcggctttc gccagcgatc tgctgcatct ctacctcggc ctgggcctcc
481tcgctggctt tggttgggcc ctggtgttcg cccccgccct aggcaccctc tcgcgttact
541tctcccgccg tcgagtcttg gcggtggggc tggcgctcac cggcaacggg gcctcctcgc
601tgctcctggc gcccgccttg cagcttcttc tcgatacttt cggctggcgg ggcgctctgc
661tcctcctcgg cgcgatcacc ctccacctca ccccctgtgg cgccctgctg ctacccctgg
721tccttcctgg agacccccca gccccaccgc gtagtcccct agctgccctc ggcctgagtc
781tgttcacacg ccgggccttc tcaatctttg ctctaggcac agccctggtt gggggcgggt
841acttcgttcc ttacgtgcac ttggctcccc acgctttaga ccggggcctg gggggatacg
901gagcagcgct ggtggtggcc gtggctgcga tgggggatgc gggcgcccgg ctggtctgcg
961ggtggctggc agaccaaggc tgggtgcccc tcccgcggct gctggccgta ttcggggctc
1021tgactgggct ggggctgtgg gtggtggggc tggtgcccgt ggtgggcggc gaagagagct
1081gggggggtcc cctgctggcc gcggctgtgg cctatgggct gagcgcgggg agttacgccc
1141cgctggtttt cggtgtactc cccgggctgg tgggcgtcgg aggtgtggtg caggccacag
1201ggctggtgat gatgctgatg agcctcgggg ggctcctggg ccctcccctg tcaggcttcc
1261taagggatga gacaggagac ttcaccgcct ctttcctcct gtctggttct ttgatcctct
1321ccggcagctt catctacata gggttgccca gggcgctgcc ctcctgtggt ccagcctccc
1381ctccagccac gcctccccca gagacggggg agctgcttcc cgctccccag gcagtcttgc
1441tgtccccagg aggccctggc tccactctgg acaccacttg tttgccaact ttcttgtaca
1501aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
1561ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)