Construct: ORF ccsbBroad304_09801

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014506.1_s304c1, BRDN0000461967
Derived from:
ccsbBroadEn_09801
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC5A9 (200010)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09801
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200010 SLC5A9 solute carrier family 5 mem... NM_001011547.3 99.9% 99.8% 807T>G
2 human 200010 SLC5A9 solute carrier family 5 mem... NM_001135181.2 96.4% 96.3% 340_414del;882T>G
3 human 200010 SLC5A9 solute carrier family 5 mem... XM_011540924.2 87.8% 87.7% 340_531del;999T>G;1011_1012ins78
4 human 200010 SLC5A9 solute carrier family 5 mem... XM_011540926.3 84.8% 74.6% (many diffs)
5 human 200010 SLC5A9 solute carrier family 5 mem... XM_011540927.1 83.2% 67.7% (many diffs)
6 human 200010 SLC5A9 solute carrier family 5 mem... XM_011540925.2 82.5% 82.2% (many diffs)
7 human 200010 SLC5A9 solute carrier family 5 mem... XM_011540928.1 69.7% 69.6% 0_1ins618;189T>G
8 human 200010 SLC5A9 solute carrier family 5 mem... XM_017000558.1 68.6% 65.9% (many diffs)
9 human 200010 SLC5A9 solute carrier family 5 mem... XM_011540929.2 53.9% 51.5% (many diffs)
10 human 200010 SLC5A9 solute carrier family 5 mem... XR_946573.2 50.3% (many diffs)
11 mouse 230612 Slc5a9 solute carrier family 5 (so... NM_145551.4 83.6% 84.7% (many diffs)
12 mouse 230612 Slc5a9 solute carrier family 5 (so... XM_006503000.2 83.6% 84.7% (many diffs)
13 mouse 230612 Slc5a9 solute carrier family 5 (so... XR_376307.3 52% (many diffs)
14 mouse 230612 Slc5a9 solute carrier family 5 (so... XM_006503002.3 48.6% 50.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2112
ORF length:
2043
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gagcaaggag ctggcagcaa tggggcctgg agcttcaggg gacggggtca
121ggactgagac agctccacac atagcactgg actccagagt tggtctgcac gcctacgaca
181tcagcgtggt ggtcatctac tttgtcttcg tcattgctgt ggggatctgg tcgtccatcc
241gtgcaagtcg agggaccatt ggcggctatt tcctggccgg gaggtccatg agctggtggc
301caattggagc atctctgatg tccagcaatg tgggcagtgg cttgttcatc ggcctggctg
361ggacaggggc tgccggaggc cttgccgtag gtggcttcga gtggaacgca acctggctgc
421tcctggccct tggctgggtc ttcgtccctg tgtacatcgc agcaggtgtg gtcacaatgc
481cgcagtatct gaagaagcga tttgggggcc agaggatcca ggtgtacatg tctgtcctgt
541ctctcatcct ctacatcttc accaagatct cgactgacat cttctctgga gccctcttca
601tccagatggc attgggctgg aacctgtacc tctccacagg gatcctgctg gtggtgactg
661ccgtctacac cattgcaggt ggcctcatgg ccgtgatcta cacagatgct ctgcagacgg
721tgatcatggt agggggagcc ctggtcctca tgtttctggg ctttcaggac gtgggctggt
781acccaggcct ggagcagcgg tacaggcagg ccatccctaa tgtcacagtc cccaacacca
841cctgtcacct cccacggccc gatgctttcc acatgcttcg ggaccctgtg agcggggaca
901tcccttggcc aggtctcatt ttcgggctca cagtgctggc cacctggtgt tggtgcacag
961accaggtcat tgtgcagcgg tctctctcgg ccaagagtct gtctcatgcc aagggaggct
1021ccgtgctggg gggctacctg aagatcctcc ccatgttctt catcgtcatg cctggcatga
1081tcagccgggc cctgttccca gacgaggtgg gctgcgtgga ccctgatgtc tgccaaagaa
1141tctgtggggc ccgagtggga tgttccaaca ttgcctaccc taagttggtc atggccctca
1201tgcctgttgg tctgcggggg ctgatgattg ccgtgatcat ggccgctctc atgagctcac
1261tcacctccat cttcaacagc agcagcaccc tgttcaccat tgatgtgtgg cagcgcttcc
1321gcaggaagtc aacagagcag gagctgatgg tggtgggcag agtgtttgtg gtgttcctgg
1381ttgtcatcag catcctctgg atccccatca tccaaagctc caacagtggg cagctcttcg
1441actacatcca ggctgtcacc agttacctgg ccccacccat caccgctctc ttcctgctgg
1501ccatcttctg caagagggtc acagagcccg gagctttctg gggcctcgtg tttggcctgg
1561gagtggggct tctgcgtatg atcctggagt tctcataccc agcgccagcc tgtggggagg
1621tggaccggag gccagcagtg ctgaaggact tccactacct gtactttgca atcctcctct
1681gcgggctcac tgccatcgtc attgtcattg tcagcctctg tacaactccc atccctgagg
1741aacagctcac acgcctcaca tggtggactc ggaactgccc cctctctgag ctggagaagg
1801aggcccacga gagcacaccg gagatatccg agaggccagc cggggagtgc cctgcaggag
1861gtggagcggc agagaactcg agcctgggcc aggagcagcc tgaagcccca agcaggtcct
1921ggggaaagtt gctctggagc tggttctgtg ggctctctgg aacaccggag caggccctga
1981gcccagcaga gaaggctgcg ctagaacaga agctgacaag cattgaggag gagccactct
2041ggagacatgt ctgcaacatc aatgctgtcc ttttgctggc catcaacatc ttcctctggg
2101gctattttgc gttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
2161tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
2221caatcaacct ctggatta

Download FASTA (ORF) (Full)