Transcript: Human XM_011540929.2

PREDICTED: Homo sapiens solute carrier family 5 member 9 (SLC5A9), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC5A9 (200010)
Length:
3123
CDS:
1625..3025

Additional Resources:

NCBI RefSeq record:
XM_011540929.2
NBCI Gene record:
SLC5A9 (200010)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011540929.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000072820 CCCGATGCTTTCCACATTCTT pLKO.1 2606 CDS 100% 5.625 7.875 N SLC5A9 n/a
2 TRCN0000072822 GCATCTCTGATGTCCAGCAAT pLKO.1 1865 CDS 100% 4.950 3.465 N SLC5A9 n/a
3 TRCN0000072821 TGCCTACCCTAAGTTGGTCAT pLKO.1 2920 CDS 100% 4.050 2.835 N SLC5A9 n/a
4 TRCN0000056902 GCCTCATTGGTGGTGTGAGTT pLKO.1 686 5UTR 100% 4.950 2.475 Y DEFA4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011540929.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489564 GTGATGCAAAAGTTTCGGTATTGC pLX_317 14.2% 57.2% 54.8% V5 (not translated due to prior stop codon) (many diffs) n/a
2 ccsbBroadEn_09801 pDONR223 100% 53.9% 51.5% None (many diffs) n/a
3 ccsbBroad304_09801 pLX_304 0% 53.9% 51.5% V5 (many diffs) n/a
4 TRCN0000476908 CCGCGGGCTGTCACTCGCTTACGA pLX_317 8% 53.9% 51.5% V5 (many diffs) n/a
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