Transcript: Human NM_001135181.2

Homo sapiens solute carrier family 5 member 9 (SLC5A9), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
SLC5A9 (200010)
Length:
3237
CDS:
22..2142

Additional Resources:

NCBI RefSeq record:
NM_001135181.2
NBCI Gene record:
SLC5A9 (200010)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001135181.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000072820 CCCGATGCTTTCCACATTCTT pLKO.1 886 CDS 100% 5.625 7.875 N SLC5A9 n/a
2 TRCN0000072818 CCTCTTACTTTGCTGTCTAAA pLKO.1 2214 3UTR 100% 13.200 9.240 N SLC5A9 n/a
3 TRCN0000072819 GCAACATCAATGCTGTCCTTT pLKO.1 2081 CDS 100% 4.950 3.465 N SLC5A9 n/a
4 TRCN0000072822 GCATCTCTGATGTCCAGCAAT pLKO.1 262 CDS 100% 4.950 3.465 N SLC5A9 n/a
5 TRCN0000072821 TGCCTACCCTAAGTTGGTCAT pLKO.1 1200 CDS 100% 4.050 2.835 N SLC5A9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001135181.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489564 GTGATGCAAAAGTTTCGGTATTGC pLX_317 14.2% 99.9% 99.8% V5 (not translated due to prior stop codon) 882T>G n/a
2 ccsbBroadEn_09801 pDONR223 100% 96.4% 96.3% None 340_414del;882T>G n/a
3 ccsbBroad304_09801 pLX_304 0% 96.4% 96.3% V5 340_414del;882T>G n/a
4 TRCN0000476908 CCGCGGGCTGTCACTCGCTTACGA pLX_317 8% 96.4% 96.3% V5 340_414del;882T>G n/a
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