Construct: ORF ccsbBroad304_10043

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004290.1_s304c1, BRDN0000460739
Derived from:
ccsbBroadEn_10043
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPCL1 (343069)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10043
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 343069 HNRNPCL1 heterogeneous nuclear ribon... NM_001013631.2 100% 100%
2 human 440563 HNRNPCL2 heterogeneous nuclear ribon... NM_001136561.3 97.2% 96.2% (many diffs)
3 human 649330 HNRNPCL3 heterogeneous nuclear ribon... NM_001146181.2 95.4% 93.5% (many diffs)
4 human 101060301 HNRNPCL4 heterogeneous nuclear ribon... NM_001302551.1 95.3% 93.5% (many diffs)
5 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077443.1 94.6% 90.7% (many diffs)
6 human 3183 HNRNPC heterogeneous nuclear ribon... NM_004500.3 94.6% 90.7% (many diffs)
7 human 3183 HNRNPC heterogeneous nuclear ribon... XM_006720125.3 94.6% 90.7% (many diffs)
8 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536712.2 94.6% 90.7% (many diffs)
9 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021252.2 94.6% 90.7% (many diffs)
10 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021253.2 94.6% 90.7% (many diffs)
11 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449558.1 94.6% 90.7% (many diffs)
12 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449559.1 94.6% 90.7% (many diffs)
13 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077442.1 90.6% 86.9% (many diffs)
14 human 3183 HNRNPC heterogeneous nuclear ribon... NM_031314.2 90.6% 86.9% (many diffs)
15 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536708.1 90.6% 86.9% (many diffs)
16 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536709.3 90.6% 86.9% (many diffs)
17 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536710.2 90.6% 86.9% (many diffs)
18 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536711.2 90.6% 86.9% (many diffs)
19 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449556.1 90.6% 86.9% (many diffs)
20 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449557.1 90.6% 86.9% (many diffs)
21 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170983.1 88.3% 88.7% (many diffs)
22 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518578.2 88.3% 88.7% (many diffs)
23 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315857.1 88.3% 88.7% (many diffs)
24 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315858.1 88.3% 88.7% (many diffs)
25 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170984.1 88% 88.4% (many diffs)
26 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518581.2 88% 88.4% (many diffs)
27 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315859.1 88% 88.4% (many diffs)
28 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170981.1 86.4% 86.7% (many diffs)
29 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170982.1 86.4% 86.7% (many diffs)
30 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315855.1 86.4% 86.7% (many diffs)
31 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315856.1 86.4% 86.7% (many diffs)
32 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518574.2 84.5% 85% (many diffs)
33 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315850.1 84.5% 85% (many diffs)
34 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315851.1 84.5% 85% (many diffs)
35 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_011244965.2 84.3% 84.6% (many diffs)
36 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315852.1 84.3% 84.6% (many diffs)
37 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315853.1 84.3% 84.6% (many diffs)
38 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315854.1 84.3% 84.6% (many diffs)
39 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_016884.3 82.9% 83.1% (many diffs)
40 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518571.3 82.9% 83.1% (many diffs)
41 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518572.3 82.9% 83.1% (many diffs)
42 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315849.1 82.9% 83.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
948
ORF length:
879
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggccagcaac gttaccaaca agatggatcc tcactccatg aactcccgtg
121tgttcattgg gaatctcaac actcttgttg tcaagaaatc ggatgtggag gcgatctttt
181ccaagtatgg caaaattgcg ggctgctctg ttcataaggg ctttgccttc gttcaatatg
241ataaggagaa aaatgcccgg gctgctgtag caggagagga tggcagaatg attgctagcc
301aggttgtaga tattaacctg gctgcggagc caaaagtgaa ccgaggaaac gcaggtgtga
361aacgatcagc agcggagatg tacggctcct cttttgactt ggactatggc tttcaacggg
421attattatga tggaatgtac agtttcccag cacgtgtacc tcctcctcct cccattgctc
481tggctgtagt gccctcgaaa cgtcaacgtc tatcaggaaa cacctcacga aggggcaaaa
541gtggcttcaa ttctaagagt ggaaagcggg gatcttccaa gtctggaaag ttgaaaggtg
601atgaccttca ggccattaag caggagttga cccagataaa acagaaagtg gattctctcc
661tggaaaacct ggaaaaaatt gaaaaggaac agagcaaaca agaggtagag gtgaaaaatg
721ctaagtcaga agaggagcag agcagtagct ccatgaagaa agatgagact catgtgaaga
781tggagtctga ggggggtgca gaagactctg ctgaggaggg ggacccactg gatgatgatg
841ttaatgaaga tcagggggat gaccagctgg agttgatcaa ggatgatgaa aaagaggctg
901aggaaggaga ggatgacaga gacagcacca atggccagga tgactctttg ccaactttct
961tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1021aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)