Construct: ORF ccsbBroad304_10137

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016472.1_s304c1, BRDN0000461399
Derived from:
ccsbBroadEn_10137
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XKRX (402415)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10137
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 402415 XKRX XK related X-linked NM_212559.3 97.1% 97.1% 0_1ins39
2 human 402415 XKRX XK related X-linked XM_011530954.3 81.3% 78.7% (many diffs)
3 human 402415 XKRX XK related X-linked XM_011530955.1 72% 72% 0_1ins387
4 human 402415 XKRX XK related X-linked XM_005262130.3 53% 53% 0_1ins651
5 human 402415 XKRX XK related X-linked XM_017029517.1 53% 53% 0_1ins651
6 mouse 331524 Xkrx X-linked Kx blood group rel... NM_183319.2 88.2% 89.3% (many diffs)
7 mouse 331524 Xkrx X-linked Kx blood group rel... XM_006528568.3 68.6% 68.8% (many diffs)
8 mouse 331524 Xkrx X-linked Kx blood group rel... XM_011247748.2 68.6% 68.8% (many diffs)
9 mouse 331524 Xkrx X-linked Kx blood group rel... XM_017318525.1 68.6% 68.8% (many diffs)
10 mouse 331524 Xkrx X-linked Kx blood group rel... XM_006528569.3 65.3% 65.5% (many diffs)
11 mouse 331524 Xkrx X-linked Kx blood group rel... XM_006528570.3 47.4% 47.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1455
ORF length:
1386
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gaacacaaga ccacaacatt cagaaagaac ctcgacaatg gacagagttt
121atgaaattcc tgaggagcca aatgtggatc cggtttcatc tctggaggaa gatgtcatcc
181gtggagccaa cccccgattt acttttccat ttagcatcct tttctccacc tttttgtact
241gtggggaggc tgcatctgct ttgtacatgg ttagaatcta tcgaaagaat agtgaaactt
301actggatgac atacaccttt tctttcttta tgttttcatc cattatggtc cagttgaccc
361tcatttttgt ccacagagat ctagccaaag ataaaccgct atcattattt atgcatctaa
421tcctcttggg acctgttatc agatgtttgg aggccatgat taagtacctc acactgtgga
481agaaagagga gcaggaggag ccctatgtca gcctcacccg aaagaagatg ctaatagatg
541gcgaggaggt gctgatagaa tgggaggtgg gccactccat ccggaccctg gctatgcacc
601gcaatgccta caaacgtatg tcacagatcc aagccttcct gggctcagtg ccccagctga
661cctatcagct ctatgtgagc ctgatctctg cagaggttcc cctgggtaga gttgtgctaa
721tggtattttc cctggtatct gtcacctatg gggccaccct ttgcaatatg ttggctatcc
781agatcaagta cgatgactac aagattcgcc ttgggccact agaagtcctc tgcatcacca
841tctggcggac attggagatc acttcccgcc tcctgattct ggtgctcttc tcagccactt
901tgaaattgaa ggctgtgccc ttcctagtgc tcaacttcct gatcatcctc tttgagccct
961ggattaagtt ctggagaagt ggtgcccaga tgcccaataa cattgagaaa aacttcagcc
1021gggtcggcac tctggtggtc ctgatttcag tcaccatcct ctatgctggc atcaacttct
1081cttgctggtc agctttgcag ttgaggttgg cagacagaga tctcgtcgac aaagggcaga
1141actggggaca tatgggcctg cactatagtg tgaggttggt agagaatgtg atcatggtct
1201tggtttttaa gttctttgga gtgaaagtgt tactgaatta ctgtcattcc ttgattgcct
1261tgcagctcat tattgcttat ctgatttcca ttggcttcat gctccttttc ttccagtact
1321tgcatccatt gcgctcactc ttcacccata atgtagtaga ctacctccat tgtgtctgct
1381gtcaccagca ccctcggacc agggttgaga actcagagcc accctttgag actgaagcaa
1441ggcaaagtgt tgtcttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
1501ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1561cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)