Construct: ORF ccsbBroad304_10207
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007541.1_s304c1, BRDN0000406593
- Derived from:
- ccsbBroadEn_10207
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERLIN1 (10613)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10207
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001100626.2 | 99.4% | 99.4% | 1_6delATGAAT |
| 2 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001347857.2 | 99.4% | 99.4% | 1_6delATGAAT |
| 3 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001347859.2 | 99.4% | 99.4% | 1_6delATGAAT |
| 4 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001347860.2 | 99.4% | 99.4% | 1_6delATGAAT |
| 5 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001347861.2 | 99.4% | 99.4% | 1_6delATGAAT |
| 6 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_006459.4 | 99.4% | 99.4% | 1_6delATGAAT |
| 7 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001347856.2 | 76.3% | 76.3% | 0_1ins246 |
| 8 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NM_001347858.2 | 54.3% | 54.3% | 0_1ins474 |
| 9 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NR_144758.2 | 32% | 1_85del;734_805del;1196_3235del | |
| 10 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NR_144759.2 | 31.5% | 1_143del;792_863del;1254_3293del | |
| 11 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NR_144756.2 | 30.9% | 1_85del;583_584ins59;1065_3104del | |
| 12 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NR_144755.2 | 29.5% | (many diffs) | |
| 13 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NR_144760.2 | 29.4% | 1_248del;746_747ins59;1228_3267del | |
| 14 | human | 10613 | ERLIN1 | ER lipid raft associated 1 | NR_144757.2 | 28.7% | (many diffs) | |
| 15 | mouse | 226144 | Erlin1 | ER lipid raft associated 1 | NM_001164359.1 | 90.8% | 95.4% | (many diffs) |
| 16 | mouse | 226144 | Erlin1 | ER lipid raft associated 1 | NM_001164360.1 | 90.8% | 95.4% | (many diffs) |
| 17 | mouse | 226144 | Erlin1 | ER lipid raft associated 1 | NM_145502.3 | 90.8% | 95.4% | (many diffs) |
| 18 | mouse | 226144 | Erlin1 | ER lipid raft associated 1 | XM_006526998.3 | 90.8% | 95.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1104
- ORF length:
- 1038
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgac tcaagcccgg gttctggtgg ctgcagtggt ggggttggtg gctgtcctgc 121 tctacgcctc catccacaag attgaggagg gccatctggc tgtgtactac aggggaggag 181 ctttactaac tagccccagt ggaccaggct atcatatcat gttgcctttc attactacgt 241 tcagatctgt gcagacaaca ctacaaactg atgaagttaa aaatgtgcct tgtggaacaa 301 gtggtggggt catgatctat attgaccgaa tagaagtggt taatatgttg gctccttatg 361 cagtgtttga tatcgtgagg aactatactg cagattatga caagacctta atcttcaata 421 aaatccacca tgagctgaac cagttctgca gtgcccacac acttcaggaa gtttacattg 481 aattgtttga tcaaatagat gaaaacctga agcaagctct gcagaaagac ttaaacctca 541 tggccccagg tctcactata caggctgtgc gtgttacaaa acccaaaatc ccagaagcca 601 taagaagaaa ttttgagtta atggaggctg agaagacaaa actccttata gctgcacaga 661 aacaaaaggt tgtggaaaaa gaagctgaga cagagaggaa aaaggcagtt atagaagcag 721 agaagattgc acaagtggca aaaattcggt ttcagcagaa agtgatggaa aaagaaactg 781 aaaagcgcat ttctgaaatc gaagatgctg cattcctggc ccgagagaaa gcgaaagcag 841 atgctgaata ttatgctgca cacaaatatg ccacctcaaa caagcacaag ttgaccccgg 901 aatatctgga gctcaaaaag taccaggcca ttgcttctaa cagtaagatc tattttggca 961 gcaacatccc taacatgttc gtggactcct catgtgcttt gaaatattca gatattagga 1021 ctggaagaga aagctcactc ccctctaagg aggctcttga accctctgga gagaacgtca 1081 tccaaaacaa agagagcaca ggttgcccaa ctttcttgta caaagtggtt ggtaagccta 1141 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 1201 gcgttaagtc gacaatcaac ctctggatta