Construct: ORF ccsbBroad304_10290
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001025.1_s304c1, BRDN0000399502
- Derived from:
- ccsbBroadEn_10290
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNHG29 (125144)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10290
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045024.1 | 50.4% | 1_155del;427_428ins44;502_642del | |
2 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027179.1 | 36.7% | (many diffs) | |
3 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027171.1 | 36.6% | 1_155del;427_428ins44;502_901del | |
4 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045026.1 | 36% | (many diffs) | |
5 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045028.1 | 32.3% | 1_155del;545_1202delinsT | |
6 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027667.1 | 30.9% | 1_155del;546_1259del | |
7 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027161.1 | 29.1% | 1_155del;428_559del;677_1334delinsT | |
8 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027160.1 | 29.1% | 1_155del;428_506del;625_1338del | |
9 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045027.1 | 28.7% | 1_155del;427_428ins44;501_1158delinsT | |
10 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027162.1 | 28% | 1_155del;428_559del;678_1391del | |
11 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027159.1 | 27.4% | 1_155del;427_428ins44;502_1215del | |
12 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045023.1 | 26.9% | (many diffs) | |
13 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027175.1 | 25% | (many diffs) | |
14 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027172.2 | 23.9% | (many diffs) | |
15 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027165.1 | 23% | (many diffs) | |
16 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027170.1 | 21.9% | (many diffs) | |
17 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045022.1 | 20.6% | (many diffs) | |
18 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027174.1 | 20.3% | (many diffs) | |
19 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027177.1 | 20.2% | (many diffs) | |
20 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_045029.1 | 20% | (many diffs) | |
21 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027178.1 | 18.9% | (many diffs) | |
22 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027158.1 | 18.9% | (many diffs) | |
23 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027173.1 | 18.9% | (many diffs) | |
24 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027166.1 | 18% | (many diffs) | |
25 | human | 125144 | SNHG29 | small nucleolar RNA host ge... | NR_027176.1 | 14.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 456
- ORF length:
- 390
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtt cccgggaagc ctgtctagag ggcggagggc agctgttgag atggcgtggc 121 tccccggctc ctgcgcccgc gtggctttcg cggcgggcgc tgcggcccgg tattggacag 181 cctggcaggg cagcgcgggg ccgaatccgg ctgccgtggc tgaggctcat ggatcactct 241 tttgtggtag ggccacatct gccagagcct ggagtctgcg aaggccggga cccggttccc 301 cggcccacag tgggggtgtg caaacccgag agaactggat tgcgtaccca ctgcagagtg 361 ctgaagacgg ggtagccacg aggttgcaaa ttcgtgaaga atcagcatca tgtttggcag 421 ctgagtattg gagccaggag cctgccatga ggttttgccc aactttcttg tacaaagtgg 481 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 541 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta