Construct: ORF ccsbBroad304_10290

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001025.1_s304c1, BRDN0000399502
Derived from:
ccsbBroadEn_10290
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNHG29 (125144)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10290
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 125144 SNHG29 small nucleolar RNA host ge... NR_045024.1 50.4% 1_155del;427_428ins44;502_642del
2 human 125144 SNHG29 small nucleolar RNA host ge... NR_027179.1 36.7% (many diffs)
3 human 125144 SNHG29 small nucleolar RNA host ge... NR_027171.1 36.6% 1_155del;427_428ins44;502_901del
4 human 125144 SNHG29 small nucleolar RNA host ge... NR_045026.1 36% (many diffs)
5 human 125144 SNHG29 small nucleolar RNA host ge... NR_045028.1 32.3% 1_155del;545_1202delinsT
6 human 125144 SNHG29 small nucleolar RNA host ge... NR_027667.1 30.9% 1_155del;546_1259del
7 human 125144 SNHG29 small nucleolar RNA host ge... NR_027161.1 29.1% 1_155del;428_559del;677_1334delinsT
8 human 125144 SNHG29 small nucleolar RNA host ge... NR_027160.1 29.1% 1_155del;428_506del;625_1338del
9 human 125144 SNHG29 small nucleolar RNA host ge... NR_045027.1 28.7% 1_155del;427_428ins44;501_1158delinsT
10 human 125144 SNHG29 small nucleolar RNA host ge... NR_027162.1 28% 1_155del;428_559del;678_1391del
11 human 125144 SNHG29 small nucleolar RNA host ge... NR_027159.1 27.4% 1_155del;427_428ins44;502_1215del
12 human 125144 SNHG29 small nucleolar RNA host ge... NR_045023.1 26.9% (many diffs)
13 human 125144 SNHG29 small nucleolar RNA host ge... NR_027175.1 25% (many diffs)
14 human 125144 SNHG29 small nucleolar RNA host ge... NR_027172.2 23.9% (many diffs)
15 human 125144 SNHG29 small nucleolar RNA host ge... NR_027165.1 23% (many diffs)
16 human 125144 SNHG29 small nucleolar RNA host ge... NR_027170.1 21.9% (many diffs)
17 human 125144 SNHG29 small nucleolar RNA host ge... NR_045022.1 20.6% (many diffs)
18 human 125144 SNHG29 small nucleolar RNA host ge... NR_027174.1 20.3% (many diffs)
19 human 125144 SNHG29 small nucleolar RNA host ge... NR_027177.1 20.2% (many diffs)
20 human 125144 SNHG29 small nucleolar RNA host ge... NR_045029.1 20% (many diffs)
21 human 125144 SNHG29 small nucleolar RNA host ge... NR_027178.1 18.9% (many diffs)
22 human 125144 SNHG29 small nucleolar RNA host ge... NR_027158.1 18.9% (many diffs)
23 human 125144 SNHG29 small nucleolar RNA host ge... NR_027173.1 18.9% (many diffs)
24 human 125144 SNHG29 small nucleolar RNA host ge... NR_027166.1 18% (many diffs)
25 human 125144 SNHG29 small nucleolar RNA host ge... NR_027176.1 14.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
456
ORF length:
390
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt cccgggaagc ctgtctagag ggcggagggc agctgttgag atggcgtggc
121tccccggctc ctgcgcccgc gtggctttcg cggcgggcgc tgcggcccgg tattggacag
181cctggcaggg cagcgcgggg ccgaatccgg ctgccgtggc tgaggctcat ggatcactct
241tttgtggtag ggccacatct gccagagcct ggagtctgcg aaggccggga cccggttccc
301cggcccacag tgggggtgtg caaacccgag agaactggat tgcgtaccca ctgcagagtg
361ctgaagacgg ggtagccacg aggttgcaaa ttcgtgaaga atcagcatca tgtttggcag
421ctgagtattg gagccaggag cctgccatga ggttttgccc aactttcttg tacaaagtgg
481ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
541ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)