Construct: ORF ccsbBroad304_10320

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007385.1_s304c1, BRDN0000411891
Derived from:
ccsbBroadEn_10320
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ALDH1L2 (160428)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10320
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... XM_011537986.2 62.8% 62.5% 1_348del;1804_1834del;1844_2331del
2 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... XM_017018889.1 62.8% 62.5% 1_348del;1804_1834del;1844_2331del
3 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... NM_001034173.4 52.8% 52.6% 1_786del;2242_2272del;2282_2769del
4 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... XM_011537988.3 47.9% 47.8% 1_786del;1865delA;1866_1867ins385
5 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... XM_017018890.2 33.8% 33.2% (many diffs)
6 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... XM_011537989.3 33.7% 33.2% (many diffs)
7 human 160428 ALDH1L2 aldehyde dehydrogenase 1 fa... NR_027752.2 19.8% 1_804del;2269_7380del
8 mouse 216188 Aldh1l2 aldehyde dehydrogenase 1 fa... XM_011243403.2 53.1% 56.1% (many diffs)
9 mouse 216188 Aldh1l2 aldehyde dehydrogenase 1 fa... NM_153543.2 45.1% 47.7% (many diffs)
10 mouse 216188 Aldh1l2 aldehyde dehydrogenase 1 fa... XR_001779502.1 44.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1533
ORF length:
1464
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggtcactttc tatggctcga cattactgaa tagctctgtg cctcctggag
121aaccactgga aattaaaggt gccaagaagc ctggtctcgt taccaaaaat ggacttgttc
181tttttggtaa cgatggaaaa gcactgacgg tgagaaatct gcagtttgaa gatggaaaaa
241tgatccctgc ctctcagtac ttttcaacgg gtgagacgtc agtggtagaa ctgacagctg
301aagaggtgaa agtggcagag accatcaagg tcatctgggc tggaatttta agcaatgtcc
361ccattattga agactcaaca gacttcttta aatctggagc aagctcaatg gatgttgcca
421ggctggttga agagatcaga cagaaatgtg gtgggcttca gttgcagaat gaagatgtct
481atatggccac caagtttgaa ggctttatcc aaaaggtcgt gaggaaactg agaggagaag
541atcaagaggt ggagctggtt gtagattata tttcaaagga ggtcaatgaa atcatggtaa
601aaatgccata ccagtgtttc ataaatggac agttcacaga tgcagacgat ggaaagactt
661acgacactat caacccaaca gatggatcta caatatgcaa agtatcctac gcttctttgg
721cggatgttga taaagcagta gcagcagcaa aagatgcttt tgaaaacggt gaatggggaa
781gaatgaatgc aagagaaaga ggaagattga tgtatagact tgcagaccta ctggaagaga
841accaagaaga gctggcaact attgaagccc ttgattcagg ggctgtctat accttggccc
901tgaagacaca cattggaatg tctgtgcaaa cattcagata ttttgctggc tggtgcgaca
961aaattcaggg ttctactatt ccaatcaacc aggcccgtcc aaatcgcaat ctgaccttca
1021ccaagaaaga gccactcggt gtctgtgcca ttattattcc ctggaactac ccgctgatga
1081tgctggcatg gaagagtgct gcgtgtttgg cagcaggcaa taccttagtg ctcaagccag
1141cacaggtcac gcccttgact gctttgaagt ttgcagaact gtctgtgaaa gcaggctttc
1201caaagggggt catcaacatc attccaggct caggtggcat agcaggacaa cgtctgtctg
1261aacatcctga catccgcaaa cttggtttca ctggatccac tcctattggc aaacagatca
1321tgaagagctg tgctgttagc aacttgaaga aagtttccct tgagcttggt ggcaagtctc
1381cacttataat atttaatgac tgtgaacttg acaaggctgt gcgaatgggc atgggagcag
1441tatttttcaa caaaggagag aactgtattg ctgctgggcg gttgttcgtg gaagaatcca
1501tccacgacga atttgtgaca agagtgatcc acttgccaac tttcttgtac aaagtggttg
1561gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1621accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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