Construct: ORF ccsbBroad304_10361
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012810.1_s304c1, BRDN0000409720
- Derived from:
- ccsbBroadEn_10361
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FKBP9P1 (360132)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10361
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11328 | FKBP9 | FKBP prolyl isomerase 9 | NM_001284343.1 | 41.6% | 41.7% | (many diffs) |
| 2 | human | 11328 | FKBP9 | FKBP prolyl isomerase 9 | NM_007270.5 | 24.6% | 24.7% | (many diffs) |
| 3 | human | 11328 | FKBP9 | FKBP prolyl isomerase 9 | NM_001284341.1 | 22.5% | 22.6% | (many diffs) |
| 4 | human | 360132 | FKBP9P1 | FKBP prolyl isomerase 9 pse... | NR_027340.1 | 19.4% | 1_166del;593_2190del | |
| 5 | human | 360132 | FKBP9P1 | FKBP prolyl isomerase 9 pse... | NR_003949.1 | 17.3% | 1_433del;860_2457del | |
| 6 | human | 360132 | FKBP9P1 | FKBP prolyl isomerase 9 pse... | NR_027342.1 | 17.2% | 1_447del;874_2471del | |
| 7 | human | 360132 | FKBP9P1 | FKBP prolyl isomerase 9 pse... | NR_027339.1 | 16.6% | 1_537del;964_2561del | |
| 8 | mouse | 27055 | Fkbp9 | FK506 binding protein 9 | NM_012056.2 | 22.4% | 23.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 492
- ORF length:
- 426
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga catgggtctc agagagatgt gcgttggcga gaaacggaca gtgatcattc 121 cgcctcacct gggctatggg gaagctggcg tggatggaga agtgcccggc agtgccgtat 181 tagtgtttga cattgagctg ctggagctgg tggctggcct tcccgagggg tacatgttca 241 tatggaatgg tgaggtgtca cccaaccttt ttgaagaaat tgacaaggat ggcaacggag 301 aagtcctcct ggaagagttc tcagagtaca ttcacgccca ggtggcatct ggcaaaggga 361 aactcgctcc tggctttgat gctgagctga ttgtgaagaa tatgttcacc aaccaggacc 421 ggaatggaga tgggaaggtc acagctgagg aatttaaact caaagaccag gaagccaaac 481 aggatgaact ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 541 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 601 caatcaacct ctggatta