Construct: ORF ccsbBroad304_10467
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012381.1_s304c1, BRDN0000399972
- Derived from:
- ccsbBroadEn_10467
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to frame shift)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF385D (79750)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10467
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79750 | ZNF385D | zinc finger protein 385D | NM_024697.3 | 99.6% | 99.7% | (many diffs) |
| 2 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007196.1 | 95% | 95.1% | (many diffs) |
| 3 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007198.1 | 93.7% | 93.7% | (many diffs) |
| 4 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007197.1 | 93.5% | 93.4% | (many diffs) |
| 5 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007195.1 | 91.2% | 90.2% | (many diffs) |
| 6 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007194.1 | 89.8% | 90.4% | (many diffs) |
| 7 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007193.1 | 87.2% | 87.8% | (many diffs) |
| 8 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007199.1 | 82.3% | 81.8% | (many diffs) |
| 9 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007200.2 | 81.8% | 81.8% | (many diffs) |
| 10 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007192.1 | 78.7% | 77.9% | (many diffs) |
| 11 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007191.1 | 75.8% | 75% | (many diffs) |
| 12 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007201.1 | 67.7% | 67.8% | (many diffs) |
| 13 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007202.1 | 65.4% | 61.4% | (many diffs) |
| 14 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_024453754.1 | 56% | 54.1% | (many diffs) |
| 15 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_011534122.2 | 33.5% | 29.3% | (many diffs) |
| 16 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_011534123.2 | 33.5% | 29.3% | (many diffs) |
| 17 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_011534124.3 | 33.5% | 29.3% | (many diffs) |
| 18 | human | 79750 | ZNF385D | zinc finger protein 385D | XM_017007203.1 | 30.8% | 28.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1251
- ORF length:
- 1185
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgag aaacataatg tattttggtg gtacatgcca gagtcctgct ctcccggccc 121 ttgtccgtcc accagcccct cctttgcaac catcgctgga tattaaacca tttcttccct 181 ttcctcttga cactgcagct gcagtcaacc tcttccccaa tttcaatgcg atggacccga 241 ttcagaaagc tgtaataaac catacattcg gggttcctct tccccaccga agaaagcaaa 301 tcatatcatg caacatttgc cagttgagat ttaattctga tagccaggct gcggcccact 361 acaaaggcac gaaacatgcc aagaagctca aagcactgga agccatgaaa aataagcaga 421 aatctgtaac tgccaaggac agcgcaaaga ctaccttcac ctccatcact accaatacca 481 tcaataccag ctctgacaaa acagacggta ctgcagggac accagcaata tcaacgacga 541 caactgtgga aatccgcaaa agcagtgtta tgacaactga gatcacctct aaagtggaaa 601 aaagcccaac gacagccact ggcaatagct catgtccttc tactgagacc gaggaagaaa 661 aggcaaaacg gcttctttac tgttcgctat gcaaggttgc tgtcaactct gcctcgcagc 721 tggaggcgca caacagtggt actaagcaca aaaccatgtt agaagcccgg aatggaagtg 781 gcactatcaa agcctttcct agggcaggag tgaaaggcaa aggacctgtt aataaaggaa 841 acacaggcct ccaaaataaa acatttcact gtgaaatctg tgatgtgcac gtcaactcgg 901 aaacgcaact taaacagcac attagcagta gaaggcacaa agacagagct gctgggaagc 961 ccccgaaacc taaatacagt ccttacaaca aactacagaa gacagcacat ccactggggg 1021 taaaattagt attttcaaaa gaaccttcaa agccattggc tccacgaatt ctaccaaacc 1081 ctctagcagc tgcagcagcc gcagcagcag tggcagtgag ttcccccttc agtcttcgaa 1141 ctgctccagc agcaacactg ttccagactt ctgcgcttcc tccggcactc ctgcggccag 1201 ctcccggacc cattcggacc gcccacactc ctgtgctgtt tgctcctact acccaacttt 1261 cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg attctacgta 1321 gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct ggatta