Construct: ORF ccsbBroad304_10472

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004149.1_s304c1, BRDN0000407123
Derived from:
ccsbBroadEn_10472
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LNX1 (84708)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10472
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84708 LNX1 ligand of numb-protein X 1 NM_032622.2 99.7% 99.6% 1890_1893delTTTTinsNNNN
2 human 84708 LNX1 ligand of numb-protein X 1 NM_001126328.3 85.2% 82.8% (many diffs)
3 human 84708 LNX1 ligand of numb-protein X 1 XM_005265785.5 85.2% 82.8% (many diffs)
4 human 84708 LNX1 ligand of numb-protein X 1 XM_017008776.1 85.2% 82.8% (many diffs)
5 human 84708 LNX1 ligand of numb-protein X 1 XM_024454261.1 85.2% 82.8% (many diffs)
6 human 84708 LNX1 ligand of numb-protein X 1 XM_024454262.1 85.2% 82.8% (many diffs)
7 mouse 16924 Lnx1 ligand of numb-protein X 1 NM_001159579.1 84.7% 88.6% (many diffs)
8 mouse 16924 Lnx1 ligand of numb-protein X 1 NM_010727.4 84.7% 88.6% (many diffs)
9 mouse 16924 Lnx1 ligand of numb-protein X 1 NM_001159580.1 83.3% 87.1% (many diffs)
10 mouse 16924 Lnx1 ligand of numb-protein X 1 NM_001159578.1 76.6% 79.2% (many diffs)
11 mouse 16924 Lnx1 ligand of numb-protein X 1 XM_017320691.1 76.6% 79.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1962
ORF length:
1896
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa ggcgcttctg ttgctggtct tgccttggct cagtcctgct aactacattg
121acaatgtggg caacctgcac ttcctgtatt cagaactctg taaaggtgcc tcccactacg
181gcctgaccaa agataggaag aggcgctcac aagatggctg tccagacggc tgtgcgagcc
241tcacagccac ggctccctcc ccagaggttt ctgcagctgc caccatctcc ttaatgacag
301acgagcctgg cctagacaac cctgcctacg tgtcctcggc agaggacggg cagccagcaa
361tcagcccagt ggactctggc cggagcaacc gaactagggc acggcccttt gagagatcca
421ctattagaag cagatcattt aaaaaaataa atcgagcttt gagtgttctt cgaaggacaa
481agagcgggag tgcagttgcc aaccatgccg accagggcag ggaaaattct gaaaacacca
541ctgcccctga agtctttcca aggttgtacc acctgattcc agatggtgaa attaccagca
601tcaagatcaa tcgagtagat cccagtgaaa gcctctctat taggctggtg ggaggtagcg
661aaaccccact ggtccatatc attatccaac acatttatcg tgatggggtg atcgccagag
721acggccggct actgccagga gacatcattc taaaggtcaa cgggatggac atcagcaatg
781tccctcacaa ctacgctgtg cgtctcctgc ggcagccctg ccaggtgctg tggctgactg
841tgatgcgtga acagaagttc cgcagcagga acaatggaca ggccccggat gcctacagac
901cccgagatga cagctttcat gtgattctca acaaaagtag ccccgaggag cagcttggaa
961taaaactggt gcgcaaggtg gatgagcctg gggttttcat cttcaatgtg ctggatggcg
1021gtgtggcata tcgacatggt cagcttgagg agaatgaccg tgtgttagcc atcaatggac
1081atgatcttcg atatggcagc ccagaaagtg cggctcatct gattcaggcc agtgaaagac
1141gtgttcacct cgtcgtgtcc cgccaggttc ggcagcggag ccctgacatc tttcaggaag
1201ccggctggaa cagcaatggc agctggtccc cagggccagg ggagaggagc aacactccca
1261agcccctcca tcctacaatt acttgtcatg agaaggtggt aaatatccaa aaagaccccg
1321gtgaatctct cggcatgacc gtcgcagggg gagcatcaca tagagaatgg gatttgccta
1381tctatgtcat cagtgttgag cccggaggag tcataagcag agatggaaga ataaaaacag
1441gtgacatttt gttgaatgtg gatggggtcg aactgacaga ggtcagccgg agtgaggcag
1501tggcattatt gaaaagaaca tcatcctcga tagtactcaa agctttggaa gtcaaagagt
1561atgagcccca ggaagactgc agcagcccag cagccctgga ctccaaccac aacatggccc
1621cacccagtga ctggtcccca tcctgggtca tgtggctgga attaccacgg tgcttgtata
1681actgtaaaga tattgtatta cgaagaaaca cagctggaag tctgggcttc tgcattgtag
1741gaggttatga agaatacaat ggaaacaaac cttttttcat caaatccatt gttgaaggaa
1801caccagcata caatgatgga agaattagat gtggtgatat tcttcttgct gtcaatggta
1861gaagtacatc aggaatgata catgcttgct tggcaagact gctgaaagaa cttaaaggaa
1921gaattactct aactattgtt tcttggcctg gcacnnnntt atacccaact ttcttgtaca
1981aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
2041ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

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