Construct: ORF ccsbBroad304_10627

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007055.1_s304c1, BRDN0000404297
Derived from:
ccsbBroadEn_10627
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX29P1 (100652781)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10627
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100652781 SNX29P1 sorting nexin 29 pseudogene 1 NR_045011.1 62.3% (many diffs)
2 human 92017 SNX29 sorting nexin 29 XM_017023877.1 42.9% 42.1% (many diffs)
3 human 92017 SNX29 sorting nexin 29 XM_017023876.2 42.4% 41.6% (many diffs)
4 human 92017 SNX29 sorting nexin 29 XM_005255683.4 42.2% 41.3% (many diffs)
5 human 440352 SNX29P2 sorting nexin 29 pseudogene 2 NR_002939.3 39.8% 1_920del;1585_1586ins82
6 human 92017 SNX29 sorting nexin 29 XM_024450491.1 32.5% 31.7% (many diffs)
7 human 92017 SNX29 sorting nexin 29 XM_011522744.3 29% 28.3% (many diffs)
8 human 92017 SNX29 sorting nexin 29 NM_032167.5 28.6% 28% (many diffs)
9 human 92017 SNX29 sorting nexin 29 XM_005255682.4 28.3% 27.7% (many diffs)
10 human 92017 SNX29 sorting nexin 29 XM_017023874.1 28% 27.4% (many diffs)
11 human 92017 SNX29 sorting nexin 29 XM_011522743.3 27.7% 27.1% (many diffs)
12 human 92017 SNX29 sorting nexin 29 XM_017023873.2 27.6% 27% (many diffs)
13 human 92017 SNX29 sorting nexin 29 XM_011522741.3 27.1% 26.5% (many diffs)
14 human 92017 SNX29 sorting nexin 29 XM_017023872.1 26.8% 26.2% (many diffs)
15 human 92017 SNX29 sorting nexin 29 XM_017023871.2 26.8% 26.2% (many diffs)
16 human 92017 SNX29 sorting nexin 29 XM_011522738.3 26.5% 25.9% (many diffs)
17 human 92017 SNX29 sorting nexin 29 XR_001752024.2 8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
813
ORF length:
747
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga tgaagagagg tccagtatgc ttcctaccat ggcagcaggt ccgaactcca
121tactctttgc gattaacatt gacaacaagg atttgaacgg gcagagtaag tttgctccca
181ccgtttcaga cctcttaaag gagtcaacgc agaatgtgac cttgctgaag gagtccacgc
241aaggagtgag cagcgtgttc agggagatca cagcctcctc tgccatctcc atcctcatca
301aacctgaaca ggagaccgac cccttgcccg tcgtgtccag gaatgtcagt gctgatgcca
361aatgcaaaaa ggagcggaag aagaaaaagc aagtgaccaa cattatctca tttgatgatg
421aggaagatga gcagaactct ggggacatgt ttaaaaagac acctggggca ggggagagct
481cagaggacaa ctccgaccac tcctctgtca atatcatgtc cgcctttgaa agccccttcg
541ggccaaactc caatggaagt cagagcagca actcgtggaa aattgattcc ctgtctttga
601acagggagtt tgggtaccag aagcttgatg tgaaaagcat cgatgatgaa gatgtggatg
661aaaacgaaga tgacgtgtat ggaaactcat caggacggaa gcacaggggc cactcagagt
721cgcccgagaa aaacggagca cactctgtca cccaggctgg agtgcaatgg cacgatctcg
781gctcactgca acctctgcct cccgggttca ggtgcccaac tttcttgtac aaagtggttg
841gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
901accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)