Transcript: Human XM_011522744.3

PREDICTED: Homo sapiens sorting nexin 29 (SNX29), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SNX29 (92017)
Length:
3392
CDS:
197..2608

Additional Resources:

NCBI RefSeq record:
XM_011522744.3
NBCI Gene record:
SNX29 (92017)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011522744.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159151 GAATGTACGGATTGTTTCATT pLKO.1 3183 3UTR 100% 5.625 7.875 N SNX29 n/a
2 TRCN0000160693 CGGAATGTACGGATTGTTTCA pLKO.1 3181 3UTR 100% 4.950 6.930 N SNX29 n/a
3 TRCN0000020937 GAACGTGACCTCCTTGCTGAA pLKO.1 829 CDS 100% 4.050 5.670 N SNX29 n/a
4 TRCN0000161256 GAGAAAGCAGCTCCAGAATTA pLKO.1 2428 CDS 100% 13.200 9.240 N SNX29 n/a
5 TRCN0000431058 AGACCAGAGTTTGTCGGATTT pLKO_005 2155 CDS 100% 10.800 7.560 N SNX29 n/a
6 TRCN0000161440 CAGCGTCATGAACAAAGTCAT pLKO.1 2455 CDS 100% 4.950 3.465 N SNX29 n/a
7 TRCN0000020938 GATCCGCTTTGGAGGGAGAAA pLKO.1 301 CDS 100% 4.950 3.465 N SNX29 n/a
8 TRCN0000160553 CATGAACAAAGTCATCCAGAT pLKO.1 2461 CDS 100% 4.050 2.835 N SNX29 n/a
9 TRCN0000020934 GAAAGGAGATTGCCTCGGATT pLKO.1 318 CDS 100% 4.050 2.835 N SNX29 n/a
10 TRCN0000163473 GATGGGATTACAGGTCGGAAT pLKO.1 3166 3UTR 100% 4.050 2.835 N SNX29 n/a
11 TRCN0000020936 TGCAGTGAAACAGTGCCAGAT pLKO.1 283 CDS 100% 4.050 2.835 N SNX29 n/a
12 TRCN0000163684 GCAGCGTCATGAACAAAGTCA pLKO.1 2454 CDS 100% 3.000 2.100 N SNX29 n/a
13 TRCN0000436434 GTCTGAACTCCATACTCTTTG pLKO_005 726 CDS 100% 10.800 6.480 N SNX29 n/a
14 TRCN0000020935 CCACCGTTTCAGACCTCTTAA pLKO.1 795 CDS 100% 13.200 6.600 Y SNX29 n/a
15 TRCN0000164032 CGAAGATGACGTGTATGGAAA pLKO.1 1285 CDS 100% 4.950 2.475 Y SNX29P1 n/a
16 TRCN0000161161 GATGATGAAGATGTGGATGAA pLKO.1 1262 CDS 100% 4.950 2.475 Y SNX29P1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011522744.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10627 pDONR223 100% 29% 28.3% None (many diffs) n/a
2 ccsbBroad304_10627 pLX_304 0% 29% 28.3% V5 (many diffs) n/a
3 TRCN0000469175 CTCCTGTAAGTGCAGTTCATTCGT pLX_317 46.9% 29% 28.3% V5 (many diffs) n/a
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