Construct: ORF ccsbBroadEn_10627
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007055.1_s300c1, BRDN0000390361
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX29P1 (100652781)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100652781 | SNX29P1 | sorting nexin 29 pseudogene 1 | NR_045011.1 | 62.3% | (many diffs) | |
| 2 | human | 92017 | SNX29 | sorting nexin 29 | XM_017023877.1 | 42.9% | 42.1% | (many diffs) |
| 3 | human | 92017 | SNX29 | sorting nexin 29 | XM_017023876.2 | 42.4% | 41.6% | (many diffs) |
| 4 | human | 92017 | SNX29 | sorting nexin 29 | XM_005255683.4 | 42.2% | 41.3% | (many diffs) |
| 5 | human | 440352 | SNX29P2 | sorting nexin 29 pseudogene 2 | NR_002939.3 | 39.8% | 1_920del;1585_1586ins82 | |
| 6 | human | 92017 | SNX29 | sorting nexin 29 | XM_024450491.1 | 32.5% | 31.7% | (many diffs) |
| 7 | human | 92017 | SNX29 | sorting nexin 29 | XM_011522744.3 | 29% | 28.3% | (many diffs) |
| 8 | human | 92017 | SNX29 | sorting nexin 29 | NM_032167.5 | 28.6% | 28% | (many diffs) |
| 9 | human | 92017 | SNX29 | sorting nexin 29 | XM_005255682.4 | 28.3% | 27.7% | (many diffs) |
| 10 | human | 92017 | SNX29 | sorting nexin 29 | XM_017023874.1 | 28% | 27.4% | (many diffs) |
| 11 | human | 92017 | SNX29 | sorting nexin 29 | XM_011522743.3 | 27.7% | 27.1% | (many diffs) |
| 12 | human | 92017 | SNX29 | sorting nexin 29 | XM_017023873.2 | 27.6% | 27% | (many diffs) |
| 13 | human | 92017 | SNX29 | sorting nexin 29 | XM_011522741.3 | 27.1% | 26.5% | (many diffs) |
| 14 | human | 92017 | SNX29 | sorting nexin 29 | XM_017023872.1 | 26.8% | 26.2% | (many diffs) |
| 15 | human | 92017 | SNX29 | sorting nexin 29 | XM_017023871.2 | 26.8% | 26.2% | (many diffs) |
| 16 | human | 92017 | SNX29 | sorting nexin 29 | XM_011522738.3 | 26.5% | 25.9% | (many diffs) |
| 17 | human | 92017 | SNX29 | sorting nexin 29 | XR_001752024.2 | 8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 813
- ORF length:
- 747
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGAAGAGAGG TCCAGTATGC TTCCTACCAT GGCAGCAGGT CCGAACTCCA 121 TACTCTTTGC GATTAACATT GACAACAAGG ATTTGAACGG GCAGAGTAAG TTTGCTCCCA 181 CCGTTTCAGA CCTCTTAAAG GAGTCAACGC AGAATGTGAC CTTGCTGAAG GAGTCCACGC 241 AAGGAGTGAG CAGCGTGTTC AGGGAGATCA CAGCCTCCTC TGCCATCTCC ATCCTCATCA 301 AACCTGAACA GGAGACCGAC CCCTTGCCCG TCGTGTCCAG GAATGTCAGT GCTGATGCCA 361 AATGCAAAAA GGAGCGGAAG AAGAAAAAGC AAGTGACCAA CATTATCTCA TTTGATGATG 421 AGGAAGATGA GCAGAACTCT GGGGACATGT TTAAAAAGAC ACCTGGGGCA GGGGAGAGCT 481 CAGAGGACAA CTCCGACCAC TCCTCTGTCA ATATCATGTC CGCCTTTGAA AGCCCCTTCG 541 GGCCAAACTC CAATGGAAGT CAGAGCAGCA ACTCGTGGAA AATTGATTCC CTGTCTTTGA 601 ACAGGGAGTT TGGGTACCAG AAGCTTGATG TGAAAAGCAT CGATGATGAA GATGTGGATG 661 AAAACGAAGA TGACGTGTAT GGAAACTCAT CAGGACGGAA GCACAGGGGC CACTCAGAGT 721 CGCCCGAGAA AAACGGAGCA CACTCTGTCA CCCAGGCTGG AGTGCAATGG CACGATCTCG 781 GCTCACTGCA ACCTCTGCCT CCCGGGTTCA GGTGCCCAAC TTTCTTGTAC AAAGTtggca 841 ttataagaaa gcattgctta tcaatttgtt gcaacgaac